RNA id: TU2017169


Basic Information

Item Value
RNA id TU2017169
length 522
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G1761094
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 64086035 ~ 64086658 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccccgttcctctccttcactcctggagtggtcttctcctctccttctcccctggaGTGGTCTTCTCCTTGCTTCCCCTGATCCTCTCCAGGAGGTGTTATGTGGTATgtggtcttctcctctcctccctgctcctctccaggAGGTGTTATGTGGTTTGTGTGACTAGGACAGGGTCAGAGCGGGACCTAGACTGTGGCTTGGTTTATAGGACCATAGAGACGGGATCACACCCAAAACTGAACAAAACACAAATGCCCACTgtctctgtttgtttcatattcgccccctccagcaccaccccaacaccaacaagTTAAAATTGAGCGTTCCTTTGTTTAGTAGTACAAAAAGATGGCGGAAGATGAGTGTTAAACATGACATCATCAGGAGGCAATGCCTACATGGTTAAAATCACACAAAGCACAACAATGATGTCATTGAAAATGAAATTGAAATGTaagtttaagtgtgtgtgtgtgtgatcatatAAACCCATTTAAAAGGCCTCTACGTTACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2017166 lncRNA upstream 7816 64077733 ~ 64078219 (+) True G1761092
TU2017094 lncRNA upstream 19851 64064949 ~ 64066184 (+) True tfr2
TU2017105 lncRNA upstream 116971 63968124 ~ 63969064 (+) True G1761042
TU2017119 lncRNA upstream 147197 63902830 ~ 63938838 (+) True G1761051
TU2017186 lncRNA downstream 25984 64112642 ~ 64113747 (+) True G1761103
TU2017195 lncRNA downstream 43261 64129919 ~ 64143764 (+) False G1761111
TU2017197 lncRNA downstream 43261 64129919 ~ 64179023 (+) True G1761111
TU2017204 lncRNA downstream 60385 64147043 ~ 64148392 (+) True G1761113
TU2017209 lncRNA downstream 67428 64154086 ~ 64154796 (+) True G1761117
XM_036958415.1 mRNA upstream 20251 63893194 ~ 64065784 (+) False tfr2
XM_036958416.1 mRNA upstream 20251 63893333 ~ 64065784 (+) False tfr2
XM_036958417.1 mRNA upstream 20251 63956217 ~ 64065784 (+) False tfr2
XM_036956535.1 mRNA upstream 206053 63832555 ~ 63879982 (+) False ctc1
XM_036958414.1 mRNA upstream 272278 63664023 ~ 63813757 (+) True zgc:158659
XM_036958430.1 mRNA downstream 461284 64547942 ~ 64579984 (+) False LOC110510008
XM_036958431.1 mRNA downstream 465806 64552464 ~ 64579984 (+) False LOC110510008
XM_036958433.1 mRNA downstream 465809 64552467 ~ 64579984 (+) False LOC110510008
XM_036958434.1 mRNA downstream 466869 64553527 ~ 64578072 (+) False LOC110510008
XM_036958432.1 mRNA downstream 466869 64553527 ~ 64579984 (+) False LOC110510008
TU2016928 other upstream 236701 63841611 ~ 63849334 (+) True ctc1
TU2016932 other upstream 248179 63832597 ~ 63837856 (+) False ctc1
TU2016942 other upstream 534543 63549905 ~ 63551492 (+) True G1760941
TU2016847 other upstream 667776 63397235 ~ 63418259 (+) False G1760865
TU2016837 other upstream 713864 63367706 ~ 63372171 (+) True si:ch73-265d7.2
TU2017339 other downstream 330779 64417437 ~ 64418064 (+) True G1761231
TU2018536 other downstream 648050 64734708 ~ 64738114 (+) False LOC110500801
TU2018538 other downstream 648050 64734708 ~ 64738114 (+) False LOC110500801
TU2018534 other downstream 667051 64753709 ~ 64754495 (+) False LOC110500801
TU2018535 other downstream 667448 64754106 ~ 64754495 (+) True LOC110500801

Expression Profile