RNA id: XM_036958415.1


Basic Information

Item Value
RNA id XM_036958415.1
length 4530
RNA type mRNA
GC content 0.52
exon number 18
gene id tfr2
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 63893194 ~ 64066184 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCTCTCTCTTTGCAGAACACATGAGTTTTAACCACGCCTCTAAACAGGGAGGTTGTGTCTCATTACCAATCAACTGCCAGGACTGCAGATATGGGAGGGGCTGTAGtttggagagagggtgaggaagggACGCAGGTATGAGTGGTTTTGGTGACAGTTGGAAGAGAGATTGGACTTTACACGCTGAGAGAAGACGAGAAGaTCAGAGACACATGGACACCATTAGAAGATCACTGCTGAGAcagccTTCCGCCTCTTCCTGCTCTATCTATCATCGTCACTCAGTAGGAGGGGCTGAGGGTAACGAGGTGGGTGGGATTGAGTTGAAGCTCGACCAACCAGAGTCCGAGGAGGAGCTGGAAGCGGAGCCTAAAGGTGACATCATTGCCTTGGTGTTACGGCAATCACTGCATCACAGGAAGACCGTAATCTACCTATGTCTTTCAACACTCATATTcactacagCGTTTCTATTGGGCTACGTGGCTTTCCGTGGGTCGTGCCACTATTGTGGTGTTGAGGGGGAGATGGTCCCTGCAGAGGATAAGCCTGGAACGGACCATGACAACCTGGTGGAGGGTATGTACCTGGGGGAACTACGGGACATGCTGAAGAAATACCTGCAAGACGAGAAGATAGAGAGCACtgtcagGCGAGTCAGCAGGACGACCCACCCATCGGGGTCCTCGGAGGGCACAGCTCTGGCAGCAGAGATACTAGAGACGTTTAAAGATCTCCACATGGACCACACCTGGACCGACTCACACTATGCTACACTACAGTTCCCCTCCAGgatcCAGAGGAACTCTCTATGGATGGTGGATTCACAGGGAGAGGTGTTGGAGGAGATTCCTCTGGAAGATCCAGACTCCTACTGTGCCTACAGCGCCACCGGCACCGCCACGgggGGCGTGGTGTATGTAAATTACGGCCGCCAGCAGGATTTTGACTGGCTGCAGTCTTCGGGAGTGTCTGTGGTTGGCTGCGTTGTAGTGATGCGTGTGGGGGGCGGGGTTAGTTATGCTGAGAAGGTGCTATTGGCTCAGAAGGCTGGAGCAGGCGGAGCCTTGATCTATCCAGATCCTGCTGATATCTCTCAGGACCCTCGACGCCTGGGGCTAAACAGTTACACCGCTATATCAGAACACGTCCATCTGGGATCAGGTGACCCCTTCACCCCTGGCTTCCCCTCCTTCAACCACACCCAGTTCCCGCCCACACAGTCCTCTGGCCTGCCTGTCATCCCTGCTCAGCCAATCAGTGCCAACGTAGCCTCCAAGCTACTCAGtcaATTGACCGGTCCAGTGTGCCCGCGCGGTTGGCAGGGCCGGCTGCCATACGTCCGTTGTGTCCTGGGGCGGGGCTTCACCTCTGCAGACGGCAGGAGGATCAGGATGGGGGTCTATAACACCATGACTCCTGTTCTACTGAACAACATCTTCTCTTCTCTGGAGGGAAGGATAGAACctgaccagTACATTATAATGGGGGCCCAGAGAGATGCGTGGGGGCCGGGGGCGGTGAAGGCCGGGGTTGGAACAGCCATCCTACTGGAGCTGGCTCGAACCTTCAGCAACATGGTGCAGAACGGTTTCTACCCCAGGAGGAGTCTGTTGTTTGTCAGTTGGGACGCTGGAGACTTTGGGAACGTTGGTGCCACAGAGTGGTTGGAGGGTTACCTGTCCATGCTACACCTGAAGGCCGTGGCGTACTTCAGTCTGGACCAGGCGGTTATGGGTGATGATAACCTGTCGGCCTACACTAGTCCTCTACTGCTCGATCTAATAGAATCAGCCATCAAACAGgtggagcATCCTAAACACACAGGCCAGACCATCTACagccaggcagagaaagaggggggcAGCTGGAAGATtatTAAGCCATTGTACCTGAACAGCGGGGCATATAGTTTCACAGCCTTTGGAGGAGTTCCTGCTATGGAGCTACGCTTCAACGAGgaCTCCCGCCCCTACCCGTTTGTCAACACCCCATTGGACACCTCCGGGCGACTCCAGGAAGTCCTGGGGGGTCGTCTGGGGGTCGTAGGGCGGAGCCTAGGAGAGCTGGTTGGTCTGATGGTGCTGCGATTGGCTCACGACCACATCCTGCCTCTACGCATCACTACCTACTCCCATACTGCACTGCAGTTCAGCGCCCAGCTCAACAAGCACTCTGCCGAGCTACAGgcTCGTGGTCTCTCTCCTCAGTGGGTGTTCAGTGCTAGAGGAGACTACAGCAGAGCAGCTGAGACCCTGCAGGAGGCCATACTGAACTCTGATGTACAGGACGAGACTATGACACGCATCTACAACACACGCATGATGAGGGTAGAGTATTACTTCCTGTCCCAGTACGTGTCTGTGGTTGAGACTCCGTTCCGTCACGTTTTGCACGGTCGGGGGGAACACACTCTGAGTGCTCTCACCGAACACCTTTCTCTACTGACCTCCGACCCCAGGCGCTTCAACGAGGCCCTTTTCCGACGGCAACTAGCCCTGTTCACCTGGACACTGCAGGGAGCCGCCAACGCTCTGAGTGGAGACATTTGGAACATAGACAATGTCTTCTAACATAAACACATGTAgagatgcatacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacactatacacacacacacactatacacaaacacactatacacactctATCTCACCTCTCTGTCCTGTCAGTATTTCTGGTGTAGGCAGACAGACACCTCTCTGTCCTGTCAGTATTTCTGGTGTAGGCAGACAGACACCTCTCTGTCCTGTCAGTATTTCTGGTGTAGGCAGACAGACACCTCTCTGTCCTGACAGTATTTCTGGTGTAGGCAGACAGACACCTCTCTGCCCTGACAGTATTTCTGGTGTAGGCAGACAGACACCTCTCTGTCCTGTCAGTATTTCTGGTGTAGGCAGACAGACACCTCTCTGTCCTGACAGTATTTCTGGTGTAGGCAGCTATAGTCCAGTCTACTGCATAGGGCTCTAGTCCAGTCTACTGCATAGGGCTCTATTCCAGTCTACTGCATAGGGCTCTATTCCAGTCTACTGCATAGGGCTCTAGTCCAGTCTACTGCATAGGGCTCTATTCCAGTCTACTGCATAGGGCTCTAGTCCAGTCTACTGCATAGGGCTCTAGTCCAGTCTACTGCATAGGGCTCTAGTCCAGTCTACTGCATAGGGCTCTATTCCAGTCTACTGCATAGGGCTCTAGTCCAGTCTACtgcatagggctctagtctagtctactgCATAGGGCTCTAGTCCAGTCTACTGCATAGGGCTCTAGTCCAGTCTACTGCATAGGGCTCTAGTCCAGTCTACTACATAGGGCTCTAATCTAGTCTACTGCATAGGGCTCTAGTCCAGTCTACtgcatagggctctagtctagtctactgCATAGGGCTCTATTCCAGTCTACTGCATAGGGCTCTAGTCCAGTCTACTGCATAGGGCTCTAGTCCAGTCTACtgcatagggctctagtctagtctactgCATAGGGCTCTATTCCAGTCTACTGCATAGGGCTCTAGTCCAGTCTACTGCATAGGGCTCTAGTCCAGTCTACTGCATAGGGCTCTATTCCAGTCTACTGCATAGGGCTCTAGTCCAGTCTACTGCTTAGGGCTCTAGTCCAGTCTACTGCATAGGGCTCTATTCCAGTCTACtgcatagggctctagtctagtATACTATAGGGCTCTAGACCAgtctagtgtactatatagggctctaGACTAGTATACTATAGGGCTCTAGACCAgtctagtgtactatatagggctctaGTCCAGTGTAGGGTACTATATAGTGTACAGGGTGTTATTTGGGATTGCTCTTGAGCGTTAATCTGTGTGATTCTTTAGTATTTCCTCTCCATGATGACCTGGTTGCTCCTCCATGGCTGAtccccaaatggctccctattgcctttatagtgcactatatgaCACCCTGGTAATGAGTGTAGTGcgctctatagggaatagggtaccgttGGGACTCACCCTATAGGATCCTGTTACTTCTATAGACACTGACCTAGGATCAGTTTTGTACTCTCTCTGCCTGGTGGTCAGGCTTAGAGTGGTGCAGGGTgatctggtcctagatcagccctTAGGGATAGTAACGACCTCCAGGTTTCTGATGTAACAGTGATTATCGGGGGCAGTGACTCCCATAATTATGACAGTTATACAGTACTGTCCTCCAATCAAACAGCAGTATCTGCTATCAATCAACCCTCATGTCACAAACGCGGGAGTGGGGCTTAAATGGTGAAGGTGAGAGGTCAAGCCAGGTGACCTGATTTGTTCAATGGAGCCTGGGTATTATTTTGCTGACGCCTCCCTTTCTCTGAGAATAACCTTAGAACCCTGACCTCCTTGTTTGTGACATCACAGGTCAGCCAGTGTTGTTGAGGAGTGTAGTGTTTTGCTACTTTGTCCCAATAAAGTATTTTCCTCTTGTTTCATAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2017077 lncRNA upstream 13656 63878766 ~ 63879538 (+) True G1761037
TU2016922 lncRNA upstream 61085 63823231 ~ 63832109 (+) True G1760926
TU2016924 lncRNA upstream 70703 63818472 ~ 63822491 (+) False G1760927
TU2016925 lncRNA upstream 70703 63818472 ~ 63822491 (+) False G1760927
TU2016923 lncRNA upstream 70703 63821657 ~ 63822491 (+) True G1760927
TU2017166 lncRNA downstream 11949 64077733 ~ 64078219 (+) True G1761092
TU2017169 lncRNA downstream 20251 64086035 ~ 64086658 (+) False G1761094
TU2017173 lncRNA downstream 20251 64086035 ~ 64086658 (+) True G1761094
TU2017186 lncRNA downstream 46858 64112642 ~ 64113747 (+) True G1761103
TU2017195 lncRNA downstream 64135 64129919 ~ 64143764 (+) False G1761111
XM_036956535.1 mRNA upstream 13212 63832555 ~ 63879982 (+) False ctc1
XM_036958414.1 mRNA upstream 79437 63664023 ~ 63813757 (+) True zgc:158659
XM_036958411.1 mRNA upstream 237703 63608671 ~ 63655491 (+) True LOC110503296
XM_036958410.1 mRNA upstream 237705 63608671 ~ 63655489 (+) False LOC110503296
XR_005038711.1 mRNA upstream 358632 63531735 ~ 63534562 (+) False LOC118942978
XM_036958430.1 mRNA downstream 482158 64547942 ~ 64579984 (+) False LOC110510008
XM_036958431.1 mRNA downstream 486680 64552464 ~ 64579984 (+) False LOC110510008
XM_036958433.1 mRNA downstream 486683 64552467 ~ 64579984 (+) False LOC110510008
XM_036958434.1 mRNA downstream 487743 64553527 ~ 64578072 (+) False LOC110510008
XM_036958432.1 mRNA downstream 487743 64553527 ~ 64579984 (+) False LOC110510008
TU2016928 other upstream 43860 63841611 ~ 63849334 (+) True ctc1
TU2016932 other upstream 55338 63832597 ~ 63837856 (+) False ctc1
TU2016942 other upstream 341702 63549905 ~ 63551492 (+) True G1760941
TU2016847 other upstream 474935 63397235 ~ 63418259 (+) False G1760865
TU2016837 other upstream 521023 63367706 ~ 63372171 (+) True si:ch73-265d7.2
TU2017339 other downstream 351653 64417437 ~ 64418064 (+) True G1761231
TU2018536 other downstream 668924 64734708 ~ 64738114 (+) False LOC110500801
TU2018538 other downstream 668924 64734708 ~ 64738114 (+) False LOC110500801
TU2018534 other downstream 687925 64753709 ~ 64754495 (+) False LOC110500801
TU2018535 other downstream 688322 64754106 ~ 64754495 (+) True LOC110500801

Expression Profile