RNA id: TU2016928


Basic Information

Item Value
RNA id TU2016928
length 840
RNA type TUCP
GC content 0.57
exon number 5
gene id ctc1
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 63832555 ~ 63879982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGTGTCACTTCCTTCAGCCGCCTGGGGTCAGAGGTCGACCGCCCTAGCGACGCCCCGCTGCTGTGGCTACTGCTGGAGAGGAATCTGGGCGTGTCTCAGTACCTGTGGCTCTGTCACTGCTGCAGAGCTCTAAGAGACAGactggtCCCTCGCtgggtgaaagaggagtgtgtgtatgtggtggcTAGGAGGCTGTTTGAGTGTGTGGTAACGtcagagaagggaggagggaggagagacatcTACAGAGAGATGCTACAGGAGCCACACCACTGTCCCCTCACTGAGtactCTGTGAGTTCTCCAGTGTGTGAGTACGTGTcggtgtcagactgtgtgtgtgtgatggagaaagagTGCTggtcgtctctgtctctctcctctctcctcccagcctgTGGTAGTTCCCTGACTCAGGCTGAGCTGAACCCATCTATAGCCTGGTCCGTAGGCCTCTCTCTGGGGCAGGACAGTCAGCCCCGACCCCTACTGCTGGTCGGAGTGTTGGAGctccctggaacacacacactccgcctGAGAGACCAGACCGGCGCCGTGACCTGTGTTGCCGTGGAGACTGGCGATGATGACTCGGGTGGTCAGAGAGCTGCCAGCAACACTGCTTggataggttGCTTGGTGTGTGTGCAGAGGTTCACCATGGTGATGGAGAGATTCCTCCAATCAGAGTTCCCTTCATACAGACACCTGGACCAGGACAGttacatcacacacagacactgcagggtgTACATCCAGCTGTGTCTGAACGACCTCCAGATTCTCAGCCCCTCTGCTGCCATGGCATCACTCCTCCTCAGAACgacacagggaggaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2016922 lncRNA upstream 9502 63823231 ~ 63832109 (+) True G1760926
TU2016924 lncRNA upstream 19120 63818472 ~ 63822491 (+) False G1760927
TU2016925 lncRNA upstream 19120 63818472 ~ 63822491 (+) False G1760927
TU2016923 lncRNA upstream 19120 63821657 ~ 63822491 (+) True G1760927
TU2016929 lncRNA upstream 24530 63816295 ~ 63817081 (+) True G1760929
TU2017077 lncRNA downstream 29432 63878766 ~ 63879538 (+) True G1761037
TU2017119 lncRNA downstream 53496 63902830 ~ 63938838 (+) True G1761051
TU2017128 lncRNA downstream 60688 63910022 ~ 63913524 (+) True G1761057
TU2017130 lncRNA downstream 67648 63916982 ~ 63922935 (+) True G1761058
TU2017105 lncRNA downstream 118790 63968124 ~ 63969064 (+) True G1761042
XM_036958414.1 mRNA upstream 27854 63664023 ~ 63813757 (+) True zgc:158659
XM_036958411.1 mRNA upstream 186120 63608671 ~ 63655491 (+) True LOC110503296
XM_036958410.1 mRNA upstream 186122 63608671 ~ 63655489 (+) False LOC110503296
XR_005038711.1 mRNA upstream 307049 63531735 ~ 63534562 (+) False LOC118942978
XR_005038710.1 mRNA upstream 308929 63531735 ~ 63532682 (+) False LOC118942978
XM_036958415.1 mRNA downstream 43860 63893194 ~ 64065784 (+) False tfr2
XM_036958416.1 mRNA downstream 43999 63893333 ~ 64065784 (+) False tfr2
XM_036958417.1 mRNA downstream 106883 63956217 ~ 64065784 (+) False tfr2
XM_036958430.1 mRNA downstream 698608 64547942 ~ 64579984 (+) False LOC110510008
XM_036958431.1 mRNA downstream 703130 64552464 ~ 64579984 (+) False LOC110510008
TU2016932 other upstream 3755 63832597 ~ 63837856 (+) False ctc1
TU2016942 other upstream 290119 63549905 ~ 63551492 (+) True G1760941
TU2016847 other upstream 423352 63397235 ~ 63418259 (+) False G1760865
TU2016837 other upstream 469440 63367706 ~ 63372171 (+) True si:ch73-265d7.2
TU2016744 other upstream 625858 63210133 ~ 63215753 (+) True G1760800
TU2017339 other downstream 568103 64417437 ~ 64418064 (+) True G1761231
TU2018536 other downstream 885374 64734708 ~ 64738114 (+) False LOC110500801
TU2018538 other downstream 885374 64734708 ~ 64738114 (+) False LOC110500801
TU2018534 other downstream 904375 64753709 ~ 64754495 (+) False LOC110500801
TU2018535 other downstream 904772 64754106 ~ 64754495 (+) True LOC110500801

Expression Profile