RNA id: TU2017128


Basic Information

Item Value
RNA id TU2017128
length 426
lncRNA type intronic
GC content 0.40
exon number 2
gene id G1761057
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 63910022 ~ 63913524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctacaatacattaagtgtgttccctcagaccactactctactaccacatatctacaatacattaagtgtgttccctcagaccactactctacaacacattaagtgtgttccctcagaccactactctacaacacattaagtgtgttacctcagaccactactctacaatacattaagtgtgttacctcagaccactactctacaatacattaagtgtgttccctcagaccactactctacaatacattaagtgtgttccctcagaccactactctactaccacatatctacaatacattaagtgtgttccctcagaccactactctactatcacatatctacaatacattaagtgtgttccctcagaccactactctactaccactactctacaatacattaagtgtgttccctcagaccactac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2017077 lncRNA upstream 30484 63878766 ~ 63879538 (+) True G1761037
TU2016922 lncRNA upstream 77913 63823231 ~ 63832109 (+) True G1760926
TU2016924 lncRNA upstream 87531 63818472 ~ 63822491 (+) False G1760927
TU2017130 lncRNA downstream 3458 63916982 ~ 63922935 (+) True G1761058
TU2017105 lncRNA downstream 54600 63968124 ~ 63969064 (+) True G1761042
TU2017094 lncRNA downstream 151425 64064949 ~ 64066184 (+) True tfr2
TU2017166 lncRNA downstream 164209 64077733 ~ 64078219 (+) True G1761092
TU2017169 lncRNA downstream 172511 64086035 ~ 64086658 (+) False G1761094
XM_036956535.1 mRNA upstream 30040 63832555 ~ 63879982 (+) False ctc1
XM_036958414.1 mRNA upstream 96265 63664023 ~ 63813757 (+) True zgc:158659
XM_036958411.1 mRNA upstream 254531 63608671 ~ 63655491 (+) True LOC110503296
XM_036958410.1 mRNA upstream 254533 63608671 ~ 63655489 (+) False LOC110503296
XR_005038711.1 mRNA upstream 375460 63531735 ~ 63534562 (+) False LOC118942978
XM_036958417.1 mRNA downstream 42693 63956217 ~ 64065784 (+) False tfr2
XM_036958430.1 mRNA downstream 634418 64547942 ~ 64579984 (+) False LOC110510008
XM_036958431.1 mRNA downstream 638940 64552464 ~ 64579984 (+) False LOC110510008
XM_036958433.1 mRNA downstream 638943 64552467 ~ 64579984 (+) False LOC110510008
XM_036958434.1 mRNA downstream 640003 64553527 ~ 64578072 (+) False LOC110510008
TU2016928 other upstream 60688 63841611 ~ 63849334 (+) True ctc1
TU2016932 other upstream 72166 63832597 ~ 63837856 (+) False ctc1
TU2016942 other upstream 358530 63549905 ~ 63551492 (+) True G1760941
TU2016847 other upstream 491763 63397235 ~ 63418259 (+) False G1760865
TU2016837 other upstream 537851 63367706 ~ 63372171 (+) True si:ch73-265d7.2
TU2017339 other downstream 503913 64417437 ~ 64418064 (+) True G1761231
TU2018536 other downstream 821184 64734708 ~ 64738114 (+) False LOC110500801
TU2018538 other downstream 821184 64734708 ~ 64738114 (+) False LOC110500801
TU2018534 other downstream 840185 64753709 ~ 64754495 (+) False LOC110500801
TU2018535 other downstream 840582 64754106 ~ 64754495 (+) True LOC110500801

Expression Profile