RNA id: XM_021579887.2


Basic Information

Item Value
RNA id XM_021579887.2
length 5425
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC110502003
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23956163 ~ 24023376 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGACTGCAAATGAGAGCAGTAGATTATTTCCTGCCTCCTTGCGGAGGGAGGTATTAGGAATTGTATGGTAGTAAGTGTAAGAAGTGGACTGATCATAACCACTAATAAACGATCAGATATTGTTTTGTAATTCAGTGTTATGTAATTCTGTCATTTTATCCTCGTAGCAGCTAAGGTTAGATCTGGGGTATGGTACCACAATTTGACTCTAGGACtcaaggacaacacacacaaagaaaaaaacagagaaacacagaaagagagagacgcacaGGAAGACATCTAAACTGCTTCTTTGCCACTGCAGCATGACTTATTGAGTCAATAGGAAATTATTAGCCTATCTTCAGTATCACGGTATATTGCCACTGGATAAATAATAGCCTACTAAATCGGGTTCGTAGATAGACTGCAGAGTAGCTGCCCCAGCTGTTTTCCCGAAAATGTGACCACGCCCCCTTACACACGAGAGCACTGGGCTGCTATGCGGAGCAGAGCAGTTGACACTACAGCTGTGATCAGAGAGACGCGCAAAGAGATGGACTAACTGCACAAGCTCCCCCATAGCATCCACTCTCAGGAGTCACCAAGCCACCACTTTCTGGAGTGTTGCTTTCAGGATCAGAATGGCTGTGGACAAGTCTCTGGGGATAGAGTAACTGCTGTGTGATTCGAGGTTTGTATTAGACGCTAGAGAGAAACAAGATAAGGAGAAGAACACAGAGAAACCTTGGGGAACGTGGAGAACGTCTTGCTTCACACATAGAAACCATGAGAATGCTAACAAAACGTTAACGGAATCTTAACGGAACACTCAGCGAGGTCATGTAGCTGCACTCGGAACGCCCTGCATGTGACCACTCTTCCTGCATCGCCTCGGCTTCTCTGATTGGCTGGTTTATAGAGTGACGGACCAATGGAGAAGAGTGCTGAGGAGCTGAACCTCTCGTTCCTGctggagcatgagagagagatgatccTCAGTGTCCTGCAGAAGGACGAGAaactgaggaagagagaggaaaagaggataCGGAAGCTGAAGAATGAGCTGGTGGAGATCAGGCGTAAGGGTTCACACTGCCCCCAGGAGGTTGGGGAGCGTCAATGTGCCCGCTGCCTGAAGGGCCTGGGCCTGATCTTCGACCGTGGGGAGCTCTGTGAGGAGTGCCTACAGCGTGTCTGCAGCGACTGCCGAGTAATGCCCCCTAAAGGAAAGCAGTGGAAGTGCTCCATCTGCTCCAAAGTCTCAGAGCTGAAGGTAGTGACCGGGGAGTGGTTCCTGGAGGAGCGGTCCAAGCGGTTTGACCAGAGTGCGGTGCTCAGCAGTGACGTTGTCAAACAGTCTATCATGAGCAGCCCTGCTGGAAGCCCCCACAGGAAGTCTCCTGCGCCAGGCGACACAATCCACACACCTGAGAGGCCTGACACGTCCAAATCAGGAAGAAGCGCCGTATGGAACCTGGTGGATGGTGCCAAGAGGAAAGGGAAAggGATGCGGATGGAAAAGAGGGGCAGCCGTCCCAGCCTGAAGCCAGAAAACGAGGCGGACGGTGGTAGTGTGTCCCCTCCTGTTCCCAACACAGACCCATGCAGCGTACGCAGCGCCCGGTCTGCACCACGCTCCACAACCCGCTCCACACCTCACTCCCACAGGGGCAGTGCTGTGGCTCTGGAGACCTTAGGGTTCCCTACTGTACCCAACAGCCTGCGCTCCCAAACCCTGGAGAGGGACAGGTCCCCTACACCCAGCAGCAAGACCAGGAGGGTCAGGccGGACGGAGCAGAGAGCGTGGCTAGTTTCCACTCCAGCGACAGCGTCTTTGACAAGATGGCCGAAACCGTCACCAGGCATGGCAGGATGGAGCCTGGTACCGCCACCCCCACCATCGCTGTCTCCAGGGCCTCCGTGTCTTCAGatcGTAGTCGTTCTGAGGTGGACCTGTCTGTTCCTGGTTCTGCCAGTGATGAGGCCCTCAGTCTGAGGAGCCACTCTGTCCCTGGGCTCAATGAACcgGAGTTGAATAATGCTGAGAAAGACGAGGACATCGATACTCTGATGTCGGCACACAGCAAGGCCACCAGCCGACGCGTGAGCAACGCTATGTCCACGTCTTCTACTCCTGGATCAGAGAGGAAATGGGGCTACCTCAGTCTCCCTGGCGACTCGGACGCAGAGACTAGCAGTCTGAACAGTATGATGAGTATGTACAGTGAGACCGGTGACTATGGCAACGCCAATGTGAGTGGGGAGCTGCTGTTGAACATCAGCTACAGCTATAAGACAGGCGCTCTCAATGTCCTGGTGAAGGAGTGTCGCAACCTGGCCACTGGGGATGAGAGGAAGCAACGCACAGACGCCTATGTGAAGGCTTACCTTCTCCCAGACAAGTCTCGCCAGAGCAAGAGGAAGACCAGCATCAAGACCAACACAATCAACCCTGTGTTCAATGAGAACCTTAGGtaTGTGATCAGCCACTCCCAGTTGGAGACGCGGACATTGCAGCTGTCTGTGTGGCACCACGACCGCTTCGGTCACAACAGCTTCCTTGGGGAGGTGGAGCTGACCTTTGACTCCTGGGAGTTTGACACTAACATGGAGGAGTGGTACTCTCTGCAACCCAAGCTGGACAGTAGAATGGACTCCACGCTCCAGTATAAAGGGGAGCTAACCGTCGTTCTTAAGTACATCCCTGCAGAGAAGAACCTCATGCTACCCCTGGACCAGGTCCAAGtgaAGAAAGGCTTTCTGAAAGGAAAGAAGACCAGCATCAAGCTGCCCAAAGGAGGAATGGTGGAGCTGCTGGTCAAGGAGGCCAAGAACCTGACCGCTGTCAAGTCTGGAGGCACCTCGGACCCCTTTGTGAAAGGGTACCTGCTCCCTGACAACAGTAAGTCCACCAAGCACAAGACGGCGGTGTTGCGTCGCACGGTCAACCCCCAGTGGAACCACACCTTTACCTACTGTGGCCTACAGGCCGGAGACCTGAACAATGTGTGTCTGGAGCTCACCGTCTGGGACAAGGAGGCTCTGGCCAGCAACGTCTTCCTGGGGGGAGTCCGACTCAACGGAgggacagACCAGAGCTATGGGAACCAGGTGGACTGGATGGACTCATACGGAGAGGAACAGCGGCTATGGCAACGCATGATTGACAACCCAGAGGTCCCCCAGGAGTGCACACTGATGCTGAGGTCCAGCATGTGCAAGCACAACACATGACATGGCgggagggagaaaaaggagagaggcaGTTGGAAAGACAGAGGGGAAACAGAAAGGTatcagagaggggagaaaaagTGGAAGTTAAGAAAGAGGGAAATAAAATGAAcaaaagagagggacagaggttgAGAGTGCTCCATGGCCTTGCTCTATCCCCGCAATAAAGAGCTGATGACATCACCCCACTTCCTGAACTTTGAACCCAAACCACTGAGCCACCCTGATCCTGCACTGGGGTTCGTGGCCCTCTACCTGGTTAAGTGGACAACCAGTCatgccttacacacacacaccctgccctcCAAAGCATCCAGCCAAGACCAAgcactgctacaacaactactaatACCGCTGTACATTGACATATATGTAACATAATGAACAAGCACGTGCCATTGTATGATCTGATCTGACTCCTGGTTTCCACTATGCACATACATTATGGGTGTGTGGGGGAACCTGTCCTTGTCTCTGTAGTTTATTTACaacactctcctctccctgtgaTGAGACCACGAGTTAGAAGTTGTCCTTATTCCCAGATGTAGGATCAGATTGTCTTGACCTGCTCCTAACTATAACCATTAGTGGGAAGTTAACatatctgaccctgtatcagtggttCAGGATAGCCTCTACCTACTCTCATAAGGTAACTACTCCAAAGGCACTTTGGGTTTGTTGCATTGCTGAGGAGATTTAAACATTCCAATAGAATACTGTACAATGACAATTAGGGTATGTTCAAGACTGAGATGTTTCATGCAATAATTGTATTATGCAACATTCTGAACTGATAATCACCTGTTTCAAATTGTTGCACAATTGCATTGTAACTGATCTTGAACGCACCAATAGTTTTACTGTTGTCTTGATAAAGCACATTTTAAGAGTAGAACAGCACAAACAatactcacttcatcaacagacGTTTTTGGACCTAACTTGTGTGGAAACAGATGAAGGCGGAAATCTAACCAGAGATCTATCAGCACCAAATTGCTGatcaaaatgtattgtgtcaAATGTGGAATAGAGAGTCAGGGCAGTTCTATCTGCAACACTGGAAATGTTTTGCCCCAGGAGCcttgaggagatgggaggaggattGCATGTTCCACGATGAGTCAGTGTCCagtccaccctctgtctgtgACTCATTGAATAAAGCACATCTGTCAGAGTGTCTGTCCCTGTAACTCAGGCCACTGTGACCCCTCGGTCCTTGTAACCTCCCTGGATGAGTAATAACACTTCTAGTATCCCCCCGTAAAGGGTTCCGGTGTCTTggcatgcgtcccaaatggtaaccttttccctttaaagtgcacttgtagagcactataaagagaatgGGCCAGTAAtcaaaggtcgctggttcgaatcgctgaggtgaaaaatctgtcgatgtccccttgagcaaggcacttaaccctaattgctcctgtaagttactctggataagagcgtctgctaaatgaaaaTAAATGGAAATGGAATGGGGTACCATTTGACCGCAGACTATGTCTCTGTATACAGTCATATCCTAGTGTGGTGCCATTCTTTCTGTGGAATGACAAGTCTGCACATTCGCCATTGTCTAAGTTTCTGTTATGCTCAACAACCATTGAAAAGTGcataataataatgatactatTAAAATGGCATTTACTGTATAGATGAGTTGTGCGCAATACCCTGCTGCTACTGAAGAAACACAAGACGTGTCTAACAGCATGTTACGGTCTCTGTTTTAATGTCCTCTCATTTCAAAACTAGATTGATTTGACTTTAGAATGTGACTGAATCCATCTCTTCTTTTGATTGCAATGTGTTATCAGAATATTTTGAAGTAATAAACCACACAGATCAGATCTCTATGTTTAGAACAGACTTTCTGAGCGTGTCTGAccgggtcagtgtgtgtgtgtgtgcacgtgtgtgtgttggCATTCACACAGCAGCCATCTCTCCTGAGCGTTAAACTAGACTGTCGTAAAACATAGTTCTGGTTCTAACTGTAACAACAGAAGGACGAGGTCACTCTTTTTAAGAGGGCTATTTAATCATGGTTGTGTGAAATCAAAGGGAACGAACAGCAGTGTACTGATGGACCAGCATCACTGGctgtcacatcacacacacacacacattcccgaGTGCTTATTATTAATGTCCTAATTAAAACACTGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2049665 lncRNA upstream 8437 23930575 ~ 23947727 (+) True G1790709
TU2049661 lncRNA upstream 32970 23922965 ~ 23923194 (+) True G1790705
TU2049651 lncRNA upstream 47198 23908760 ~ 23908966 (+) True G1790695
TU2049649 lncRNA upstream 50436 23905418 ~ 23905728 (+) True G1790693
TU2049632 lncRNA upstream 109135 23845665 ~ 23847029 (+) True G1790676
TU2049750 lncRNA downstream 28343 24050880 ~ 24051163 (+) True G1790785
TU2049781 lncRNA downstream 55001 24077538 ~ 24077768 (+) True G1790814
TU2049792 lncRNA downstream 100277 24122814 ~ 24123198 (+) True G1790825
TU2049768 lncRNA downstream 118235 24140772 ~ 24141197 (+) True G1790801
TU2049770 lncRNA downstream 302356 24324893 ~ 24325151 (+) True G1790803
XM_036959555.1 mRNA upstream 54181 23894454 ~ 23901983 (+) False LOC110502009
XM_021579919.2 mRNA downstream 62364 24084901 ~ 24118246 (+) False LOC110502017
XM_021579920.2 mRNA downstream 63080 24085617 ~ 24118246 (+) True LOC110502017
XM_021579936.2 mRNA downstream 103356 24125893 ~ 24137925 (+) False LOC110502026
XM_021579934.2 mRNA downstream 105322 24127859 ~ 24137925 (+) False LOC110502026
XM_021579933.2 mRNA downstream 106384 24128921 ~ 24137925 (+) False LOC110502026
TU2049337 other upstream 523781 23416093 ~ 23432383 (+) True G1790442
TU2047594 other upstream 1956541 21998473 ~ 21999623 (+) True G1788815
TU2047590 other upstream 1960071 21995364 ~ 21996093 (+) True G1788811
TU2046423 other upstream 2819687 21134265 ~ 21136477 (+) True G1787719
TU2044940 other upstream 3671593 20283181 ~ 20284571 (+) True G1786330
TU2049772 other downstream 96025 24118562 ~ 24119475 (+) True G1790805
TU2050548 other downstream 371531 24394068 ~ 24410713 (+) True LOC110501605
TU2051105 other downstream 820405 24842942 ~ 24843285 (+) True G1792040
TU2051120 other downstream 826429 24848966 ~ 24849344 (+) False LOC110501609
TU2051116 other downstream 984638 25007175 ~ 25013655 (+) True LOC110501609

Expression Profile