RNA id: XM_036959284.1


Basic Information

Item Value
RNA id XM_036959284.1
length 3645
RNA type mRNA
GC content 0.55
exon number 9
gene id plekhm3
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 38758854 ~ 38843342 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGTTTTGCCGCAACTGTAGGTTAATTTGTGTGACGTTGGGGAATGGGtatggaacagggttggagtaatTTAAAAGGACTTTAAATGTTCAGTTACAAAAAAGCTATGTGATTTTCGTGCAAAACACAGGGGGACAATGAGACATAGGGATGTAGAATAAATTAGGTACAGAtgtagtaactgaaaggtttgtCAATTCACCAAAAGTTCCTCAATTATTATTGCTACACACACTTGTGtaataatgatcatgctgtttccaTCCATGTTGAGATTATAATTACACCAGAATGATCATGTTAGTAGTGCCATAGTATGGTATTATTACTTATAGAATCAATCATAAATCCCATGTTATTGCAGAATTGACAACTCTCTACAGTAATTTCTCTGAACTGATCTGGGGGAAATGAATGGTTGAGAATCAGGACACCCTTTCTCCAGAATGCATGGCCAACTCACACAAGTTGCAAGAGACGGAACATTTAACGAAGGAACTATCAGTTCTGTCCGGTGAACGGACCAGAAAATTATATATTTGTAAACAGAATCAGTGAAGCCTCACATTGTGTCCTTTTGATGGCATCATCATCATCCAATGTGGAGGAAGAGCATTATTCTTTGTTACACACATCCTCATGTGGATTCATGTGAGagctgactcacacacacagagagagagagagagccatcagCCTGTGTAAGAAAAGCAGTGCCAGCCCAAAACTGTGTCATAAGAATTTCTGGCAAAGGCCAGAGCTATCATAAACTCAATAAGAGTGTCCGCCTCTAGCTAGTTGATTAACAGAGCTGTGTTAACGAGGAATTGTTTTCCTGGAAGAAGCCTCCTACCCTCGAGGAACACGGCTTCCCTCTGGGGCTCAGACTGCAGATGCTTCAGCTGCGAGGTCCAGAGCCGCTTGGATCGTCCCCTGCCCAGAGAACCACCCAGCCCCATAGAGAACCACCACCCCGCCTGCCCTAACAGCCTCCACACGGGGCCAAGCCGAGGAGCACCATGGAGGAGGTAGAGGACATTAGCCCTGCCCTGGAGGCCACTGAGGACTTCCTACACTGCCTGGACGGAGGTGGAGgccagggaggggagggggtccGGCAGCCCAGGCAGCACCACCCCAAGCTGCAGGAGATGTCTGTAGCCCTGGGGAAGCTGAGCTCTAGCGGGGTGTGGGGCCTGCTGGCTGGGGAGCAGGGGACCGAGGTATCCCCGCATAACGTGGCCTGGGCTGACCAGCCCTCGGCCTTCAGCGTGCTGGCTCTGAGGCAGGGGAAAAGGAGCCGTGCTCGTTCCACTAATGACCTGGCCGCCCACACCAAGGACACCAACAACACCTCCTCTAACGCCGCCTTTAACAAAGGCCACAACCGCTCGCGGTCTGATGTTAATTACCGGCCGTCCTACATGGACAACGCTAACGGCCTGCCTGCTGTGGACAAGAATACGCTGAAGAACATGGCTCTCAACGACCATAGAGAAGAAGgcCGTAAGGACAGCAGCGGTAGTGTGGTGAAACAGGGTACCCTGGAGCATCGTGAGGGTCAGAAGGGTCGTTGGAGCGTCTGTCACGTAGAGCTGACCCCATGTGAGCTGCGCGTCTACAGCCTGGACAGCAGCGGTAACCGTCAGCTCTGCACTGCCTACTCCCTGTCCCACTGCCAGGGGGTCAGCCAGTCCCAGCCGCCCCAGGACGGGCGAGTCCTCCAGGCCCTCTTCTTCAACAGCTCCACCCGCCTGCAGTTACGTGCCGCCTGCCAGTGGGAGGTGCTAGACTGGAGGAGGCTGATCTGGGAGAGAGTACTGGCTGCCCAGCCCGCCCACAAAAATGCAGAGTGTCCTTCTGTTACCTCTGGAGGTCACGACACCAGACCAGATCCCCGTGGTCCTGCTGAGGCTGCCCTGGCCCCTGGTTGCTCTCATCTCCTCCCAGCCCGGCCCACGGCCCTGCCCCTGTTCACCCACTGCTGTACGGATGTCCTCAAGGCTGGGATCCTCCACCAGCTGACTGACCAGAACAACTGGAGGGCCTTCACCTTCGTACTGAGTCGCTCCACGCTGCAGGCCTTTCCCACCGAGGGCCGGGGGCCCGTGTCTGAGCCCGTCCTCCACTACCCGCTGGCCTCCTGCCTGGCCGTGCAAAGGGACGAGGCCGAAGGGGTGAGCGCTGGCTGCTTCCAAGGCGTCTTCCCCAGCGAGGTGCTCCGTCTGCGGGCTGAGAGCCAACTCAAAGCCCAGGACTGGGTGGAGGCCCTGCAGATGGCCGTGGCAGCCCAGAGGCCCCAGGGTGAGGAGGGACAGGGTTCCGGCCAGGCCCAGCCGGGTACAGTGTCGACGGGGATTCTGCTGAGGAGCAAGCCCtccagggagaggaggcagagggacaCCCAGAGGGCCAAGAGACAGTCAGTCACCACCAGCTTCCTCAGTATCCTCACCTGCCTGGCTGTGGAGAAGGGCCTGACCACCCAGAGCTTCCGGTGTGCAGGGTGTCAGAAGCCAGTAGGGTTGTCGCAGGGCAAGGCCAAGGTGTGTTGCTACAGTGGCTGGTACTACTGCCAGAGCTGTCACCAAGACAACCTGTTCCTCATCCCTGCCCGCCTGCTGCACAACTGGGACACCGACAGACACAAGGTGTCCAAGCAGGCCAAGGAGTTCCTGGAGTTTGTTTATGAGGAGCCGCTGCTGGATGTGCAGCAGTTGAACCCGTGTCTGTATGAACACTGTGAGGGCCTGGCTGCAGTCCTACGCCTGAGACAGCAGCTCCAGTCCCTCAGAGCATACCTGTTCAGCTGCCGTGCTGCCGTGGCCGAGGACCTCCGGAgaaggATCTTCCCCAGAGATTACCTACTGCAACATATCCACCTGTACTCACTGGCTGACCTGCAACAGGTGATAGATGGGACGCTGGCCCCCTTCCTCTCCAAGGTGATTCAGTTTGCCAGTTCCCATGTCTACAGCTGCAGACAGTGCAGAGAGAAGGGCTTCATCTGTGAGATGTGTCAGAACGGACAGGTCATCTACCCCTTCCAGGAGAGTGCTACTAAGAGATGTGATGTCTGCGGAGCGGTGTTCCATACAGAGTGTCGTCAGAAGGCCCAGCCATGTCCACGCTGTGTCCGCAGGGAGCTCCACCACACGAGACCCTCGTCCTTCTGGAGCCCTAACGACGATACACCAGGCTGCTTCACAATGCCCTACCAGGACACCtgatcacacacagagagagaaacagcggacccactccacagagctgctcttaccaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagggagagagtcgGCCAGGATAAACAGTAACAGAAGTGTTGATGACTAAGCAAGGATCATGCTCCCTGACACACCTGCTTTTTGATCTGACATCACTCTCTCCTGGGAGAGATGGACACTAACGCAAGACCCACTGGAGAGGAACTACTCTGCTTTCTGCAATAGAAACACTCTTTTCATGCCACTTTAAACAGCTATGACCGGaagcaggggttggaaccaaaattatttttcaatcatttcgttctgaacagaaccatttgttttttaaatttcatTCCACTGTTCTGCTCTGCAAAATAAAGTTCCAAAAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2067930 lncRNA upstream 12965 38737813 ~ 38745889 (+) True G1807489
TU2067952 lncRNA upstream 23162 38735423 ~ 38735692 (+) True G1807510
TU2067943 lncRNA upstream 32291 38726005 ~ 38726563 (+) True G1807502
TU2067941 lncRNA upstream 34832 38723569 ~ 38724022 (+) True G1807500
TU2067936 lncRNA upstream 47445 38711180 ~ 38711409 (+) True G1807495
TU2068013 lncRNA downstream 9848 38853190 ~ 38853499 (+) True G1807560
TU2068014 lncRNA downstream 10383 38853725 ~ 38853925 (+) True G1807561
TU2068015 lncRNA downstream 10877 38854219 ~ 38854468 (+) True G1807562
TU2068020 lncRNA downstream 22357 38865699 ~ 38866100 (+) True G1807567
TU2068024 lncRNA downstream 25331 38868673 ~ 38868926 (+) False LOC110501853
XM_036959281.1 mRNA upstream 4360 38740986 ~ 38754494 (+) False LOC110501851
XM_036959282.1 mRNA upstream 4360 38742130 ~ 38754494 (+) True LOC110501851
XM_036959275.1 mRNA upstream 239347 38491565 ~ 38519507 (+) False LOC110501849
XR_005038833.1 mRNA upstream 239347 38491565 ~ 38519507 (+) True LOC110501849
XM_021579695.2 mRNA upstream 273411 38476244 ~ 38485443 (+) False LOC110501847
XM_021579700.2 mRNA downstream 25399 38868741 ~ 38874314 (+) False LOC110501853
XM_021579707.2 mRNA downstream 608250 39451592 ~ 39455125 (+) True zgc:162780
XM_036959290.1 mRNA downstream 634912 39478254 ~ 39566624 (+) False LOC110501860
XM_036959291.1 mRNA downstream 634916 39478258 ~ 39566624 (+) False LOC110501860
XM_036959289.1 mRNA downstream 634918 39478260 ~ 39566624 (+) False LOC110501860
TU2067810 other upstream 347691 38406137 ~ 38411163 (+) True G1807376
TU2067724 other upstream 442601 38299127 ~ 38316253 (+) False G1807306
TU2068019 other downstream 19398 38862740 ~ 38863136 (+) True G1807566
TU2068780 other downstream 305738 39149080 ~ 39151333 (+) True G1808209
TU2069485 other downstream 850571 39693913 ~ 39694868 (+) True G1808787
TU2069833 other downstream 1081072 39924414 ~ 39925395 (+) True G1809107
TU2071418 other downstream 2346347 41189689 ~ 41192492 (+) True G1810553

Expression Profile