RNA id: XR_005038833.1


Basic Information

Item Value
RNA id XR_005038833.1
length 3285
RNA type mRNA
GC content 0.51
exon number 21
gene id LOC110501849
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 38491565 ~ 38519507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAGGGCGGGGTATTCGGAAAGTGCTGCTCCGATTGGGGCGCTCgatagggggaagagagatggcGTGCTTGTTGGAGGCCCCTCTCCGCATCAGCGTGTTATCTGAGGTCACGGCCACCAGCCGCCATTATGTTGACCGGCTGTTCCACCCCGATCCACAGAAAGTGCTGCAGGGAGTCATtgACATGAAGAATGCTGTCATCGGAAACAACAAACAGAAAGCCAACCTGATTGTCCTGGGAGCTGTGCCCAGGTTACTGTACCTGCTCCAGCAGGGCTTATCCAGCTCTGAGCTGAGGACAGAGGTGTTGGGCTCAGAACTGAGGACAGAGGGTGCGGTGGTGCTGAGGACAGAGGTGCTGGGCTCAGAACTGAGGACAGAGGGTGCAGTGGTACTGGGCTCAGAACTGAGGACAGAGGGTGTGGTGGTACTGGGCTCAGAACTGAGGACAGAGTGTGTGGTGTTGCTGGGCTCAGAACTGAGGACAGAGGGTGCAGTGGTACTGGGCTCAGAACTGAGGACAGAGGGTGCGGTGGTGCTGAGGACAGAGTGTGTGGTGGTACTGGGCAGTCTGGCCATGGGCACAGAGAACAACATCAAGTCCCTGGTGGACTGTCACATCATCCCTGCTCTGCTGCaagGTCTGGTATGTCCAGACCTGGTCTTCATCGAGGCTTGTCTTCGCTgcctcaggacagtcttcatcaGTCCAGTCACCCCAGTGCAGCTGCTCTACACTGACCCCACTGTGATTCCCCACTTGATGTCCCTGCTGAGTCGGTCTCCGCGGACGCAGGACTACATCACCCAGATCTTCTCTCACTGCTGCAAGagtCCAGAGCATCAGACGGTTCTGTTTAACCACGGGGCGATCCAGAACATTGCTCCcatgctcatctctctctcctataagGTACGAATGCAGGCATTAAAATGCTTCTCAGTCCTGGCCTATGAGAACACTCAGGTCTCCATGACATTGGTGAATGtGCTGGTTGATGGGGATCTGCTCTCTCAGGTATTTGTCAGAATGTTGCAAAGGAATCTGCCCATTGAAATGCAGCTCACAGCAGCCAAGTGTCTAACATACATGTGTCGAGCGGGAGCCATCAGAACAGATGACAGGTGCATTGttttaaagaccctgccgtGCCTGGTGAGGATGTGCAGTAAGGAGCGTCTGTTGGAGGAGCGTGTGGAGGGGGCAGAGACCCTGGCCTACCTGATGGAGCCTGATGTGGAGCTGCAGAGGATCGCCAGTGTAACCGACCACCTAGTGGCCATGCTGGCTGACTACTTCAAATACCCCAGCTCTGTCAGCGCCATCACTGACATCAAGAGGTTGGATCACGACTTGAAGCACGCACATGAGCTGAGGCAAGCTGCCTTCAAGCTGTACGCCTCACTGGGCTCCAACGATGAAGACATCCGCAAGAAGaTCACAGAGACCGAGAATATGATGGACAGGATAGTGAGCGGCCTGTCAGAATCCAGCATCAAGGTGCGGCTAGCAGCCGTCAGGTGTCTTCACAGTCTGTCCCGGTCAGTCCAGCAGTTGAGGACTAGTTTTCATGACCACGCAGTATGGAAACCCCTTATGAAGttgTTACAGAACGCTCCAGACGAAGTGCTGGTCATGGCCTCTTCTACACTATGCAATCTGCTGCTGGAGTTCTCCCCCAGCAAAGAGCCTATCCTGGAGTCAGGGGTGGTAGAGTTACTGTGCAGTCTGACCCAGAGTGACAGTCCAGCCCTGAGGGTCAACGGCATTTGGGCTCTCATGaACATGGCGTTCCAGGCAGACCAGAAGGTGAAAGGGGAGATTGTGAGAGCTTTGGGGACGGAGCAGCTTTTCCGTCTGCTCTCTGACCCGGACACTAACGTCCTGATGAAGACCTTGGGCCTGTTACGGAACCTGCTCTCCACACGACctcacataGACCAGATCATGAGTTCCCATGGGAAGCAGATCATGCAGGCGGTCACTCTGATCCTGGAGGGGGAACACAGCATTGAGGTCAAGGAGCAGACACTCTGCATCCTAGCCAATATTGCCGATGGCAACACAGCCAAGGAACTCATCATGACCAATGACGACATCCTCCAGAAAATCAAATATTACATGGCTGCCAGGAGCGTCAGGACAAGCTGAGGGAGTTGGGCTTTGTAGACATTCTGCACAAACTCACCCAGGCCTTAGACCCCAACCTCTGTGAaaggGCGAAAACAGCGATGCAGCATTATCTGGCGTGACCCCACGGGGGCAGTCTCAGATGTTGTTTCCCCTAACAACACAACTAACAAACCAACCGCCTGCCAGGAGGAGACCTGCCAGGAGGAGACCTGCCTCCTTGCTGCCATTGTTTTGTTCTGATCTCCTTCACTTTAATCTTCCGTTTTTGTTTGGTTGCACAAAGACACCTTTTGAGCTGCAGAGGCAGAGTCCCCTTCCACCTCATCACCCCAATACTGACCTCCATCCCAGCCGGAGACTTTAAGACTCGGTTGGATGGGGAAACGAGTGTTCGCTGCTCACCAACTGGGGGTAggtttcattattattattatttttttatgcaAAGAGGTGaagattttgtttttgtttcttgGACTTGATGTGAAGGAAGAAAGGATTAGTAATGTGCAGCACAGCAGCCAGCCATCGCAGCACATCGCCACCTTGTGGCCAGGAGGCCTAGGTGCTTTTGGACTCGTTATGgaggagatggacagaaagacGTCACAGAGCCGGACTGAAGGTTCTGACGGACTGAAGGTTCTGACGGACTGAAGGTTCTGAAGGACTAAAGGTTCTGAAGGACTAAAGGTTCTGACGGACTAAAGGTTCTGACGGACTAAAGGTTCTGAAGGACTAAAGGTTCTGATGGACTAAAGGTGCTGACGGACTGAAGGTTCTGATGGACTAAAGGTTCTGACGGAGAGGGCAGGGTTGTGGGAGCATCACTTCCTCTTGCTTTAATTTAGCTAATTATTGATTATtgatattactattattattatttgaatggCTTTATGTCACGAGAGGACACGTTTGGGTAAAAAAGACTGTTAATTTTGAAATGTGTGGTGATTTCTTTTTTTGTGTGCATACATACCTCgtaaatatatataaacatataaatatattttggggATTTTTCATctctttgttttcttcctgtttcTGATCCTGGTTCCAACAGGAagtagggtgtgtgtttctatggTGTGAACAGAGCAACAATGGGAGGATCCTGTGGTCaataaaatatttacaaatgt

Function

GO: NA

KEGG:

id description
K23336 ARMC8; armadillo repeat-containing protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2067748 lncRNA upstream 185784 38304116 ~ 38305781 (+) True G1807316
TU2067726 lncRNA upstream 188990 38282124 ~ 38302575 (+) False G1807306
TU2067704 lncRNA upstream 269743 38221088 ~ 38221822 (+) True G1807287
TU2067699 lncRNA upstream 277780 38213394 ~ 38213785 (+) True G1807283
TU2067662 lncRNA upstream 332586 38155916 ~ 38158979 (+) True G1807256
TU2067855 lncRNA downstream 19878 38539385 ~ 38539655 (+) True G1807420
TU2067892 lncRNA downstream 75783 38595290 ~ 38596078 (+) False G1807454
TU2067893 lncRNA downstream 76130 38595637 ~ 38597064 (+) False G1807454
TU2067890 lncRNA downstream 76643 38596150 ~ 38597064 (+) True G1807454
TU2067897 lncRNA downstream 95035 38614542 ~ 38685713 (+) True G1807458
XM_021579695.2 mRNA upstream 6122 38476244 ~ 38485443 (+) False LOC110501847
XM_021579694.2 mRNA upstream 6122 38476420 ~ 38485443 (+) True LOC110501847
XM_021579691.2 mRNA upstream 35277 38450825 ~ 38456288 (+) True LOC110501844
XM_036959268.1 mRNA upstream 278374 38079807 ~ 38213191 (+) False LOC110501842
NM_001160540.2 mRNA upstream 462536 38023006 ~ 38029029 (+) True mob3
XM_036959281.1 mRNA downstream 221479 38740986 ~ 38754494 (+) False LOC110501851
XM_036959282.1 mRNA downstream 222623 38742130 ~ 38754494 (+) True LOC110501851
XM_036959284.1 mRNA downstream 239347 38758854 ~ 38843342 (+) False plekhm3
XR_005038834.1 mRNA downstream 239930 38759437 ~ 38833299 (+) False plekhm3
XM_036959285.1 mRNA downstream 239930 38759437 ~ 38842908 (+) False plekhm3
TU2067810 other upstream 80402 38406137 ~ 38411163 (+) True G1807376
TU2067724 other upstream 175312 38299127 ~ 38316253 (+) False G1807306
TU2068019 other downstream 343233 38862740 ~ 38863136 (+) True G1807566
TU2068780 other downstream 629573 39149080 ~ 39151333 (+) True G1808209
TU2069485 other downstream 1174406 39693913 ~ 39694868 (+) True G1808787
TU2069833 other downstream 1404907 39924414 ~ 39925395 (+) True G1809107
TU2071418 other downstream 2670182 41189689 ~ 41192492 (+) True G1810553

Expression Profile