RNA id: TU2050586


Basic Information

Item Value
RNA id TU2050586
length 3169
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G1791545
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24519613 ~ 24555699 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAACATTggaaacaaaacatgaaacaaCACGTATATAATTCTGATTTTCCACAAACACAATGTATGCaggtaaaatatactgtatgtctgtcaaAAAGAAGGGGAAGAAAACAACAACTATGAAAACAAGGCTGTGATATGCCTATGTGCTAAAATATGTATCATTGGAATACTGTACATGGACTGAGAACAGTAAAATGCCCCTTCTGCACTGGCTTTAGCACCAGACATCTGGTCTAGGAACCTTatgacaaagagagggagacctGACTATGAATGAAAAATGGCAGTACCTAGTTCTTTAGATCAGTTGTGAAGTCAGAAAACACATTGGGGATCGGGATTGGGGGACATATGTGTGTAGCTTTTACTGTATTTTAGGAAGGGGAAACATGGTAGGGTGACAAGCGCATAGGAGACATGGCAGTCTTAAATGACAGTGTGAAATGGCAGTGTGAAATGGCAGTGTGACATGGCAGTGTGAGACAGTGCAGTGATTCACAGTGTAAAGGGTAAAAGGATATTCAAATATCAAGCGTTAACTGCCGTGCATCGGTGGGTAAGAGGAAATGATGAGTGGTCAGATCATGCAGAGAGACAAAGAACTAACATCCTGTCTGAAATGCCTTAAAAAAAGTATGCATacctcttcatcctcatcatgtTTTCACTGCTTCACTAAATCATTCATAGTAGTATGGGATAAATagacacaatacaaaacaggacGAACCTTAACCATGTTTAGTGGTGGACCTCAGCACATCGGAGTAGGAGTGGTACACCTACCTATATGAAGTGATTTATTTTGTGTGTAGGATACtggtattgactggtactgtctcaATGTAAGTAGTGTATACTGTGTGCACTGTGGCAGCTCTGTCCAATAGTCATATGTACATGATGTAGAACTACAATATGACCAACTGTATTGTTCTATCCAGACGTGTTGTTTCACCTCCGTTCCAATCCTAAAGCATCGTCCAATCACATATAGACATGCTATCTTAACACTATCACTTTGAAATACTGTAATCCAATGTCGTTAGCAGAGCTTTGGTGTTCACAAGGTCTGGTTATGTGGCTCACTCCTAGTCAATGTTTGATGTGATCTTCGCCCAATTTCTGTAGAAAATGTTGTGTTTcttatcacatacacacactcacacgcacacacggcTCAATCAACAACCAAGGACGCGCTAGTGATGGCGCTGCTAATTCCTAATACAGGATCAATCAGACTGTTGAAGGGTGATCAGTGTAAATGAGAAATCAATCAGAGCTATTGATACTTCCTGGCTTTTACAGTCAAACCAATCTTCTAAGAACCAACGGCTTGCAGAGGCACACCCATCCAATTTACCATGGTCAGATTACCCTCCCCAATCATAACCGTAACCATTAGGGGGATGTTAAAATATCTGATCCTATATCAGTGGTTAGGGGCAACTTCTAGCTACTCCTTTACGATGTGGAAACCCCACCAAATATTGTGCAATTTATCATCCAAACAACCATCAGACAAATGGTGGAAACCTCAGTCTTTCGCCACTGTAATATTGTCTTACAATGGTGTCGCagggaaacaaacaaacaaactaaataaatacagtataaaGAAGTTTCATAGTAGTAGACAATCATTCCGCAAAAAAGGTGTTCACATTATAAAATAAACCTCTTCTCTTTGCCTCAGTCATTGCATTAAACCCAAGACAATCATATAATTCTCCATCTGCCAGATAGACAATTCTCCAAATCCCTTTCCATCTTCCCATTTCTGTGCTATTCTGATATAGTAAATTAAAACATTTGACAATTAAACATAGGCCATTATTTACAGGGAGGTTACCCTGGCAATGCCCTCTGACCCCTACAGTATCTTGGAGGGGGTGTTGGGATATTGCAGGGTTTGGGAGGGAAATAAAGAGAGTGATTGAGGAGGATGGGGTAGCTTTACATGAGAACTCTGTTGTGCTCCAGTTGCATCCTTGAAATGTACAGAAAAGTGTACAGGCTCCTAACATTGATTTACACAAGATAGAACATATCAAATGGGACGCTAATATGAAGGAAGTACCATTGTGGTTTAGAGCTTATTTCTCTGAGATGTTTGTAGAATAAGTCTAGATAAGTAGTTAATTGAGGGACTGCGACAGATAGTTGTGCGTTGGCTCTACACAAACACATCAGTAAAATACATCAGCCATAGCTGAGGTTGACTGGCCTAGAGTCCCGTTGTATGGCACTAAGCCCAGTAAAAACCTTACAGGACATTGATACAATCTGATCACAGGTGATCTAGCTACATGAACTAGCTACTATGGCCATCGTTGTAAAATACAGCTCTGCTATTGTCTTGCCTAGTCAGTAATATCTGccagtgtttttattttatttactgttGTGGATGTTCTGTTCGCGCTAAAGCGAAAGGCTGTTGGCTAGCTGGGGATGAAACAAGTGCACCATGGGATATCGCTGAGGTTTCCCTGACCCCTGAACTCTGAGCTATTGTTGCCAGGGTTACAGAAGCACCTAAAGCACCTTGTAGCATGAGGCTAAAGCGGTAGCTGATACCTGAAGGAGTCCAGAAGACTAGAGACAGGAGTTTTCCCTGGTCAgatcacatggtcaggaaaaccTCCTGGTCCTAGAGATGATAACTGGTCTGTAAGCCAGAGCAGTGAGGTTTAACACAGGAGATGTTTAAAGGCCTTGGCTCGCTTGTAAACTTCAGACATGTCTGGAGGGAAGGGTACACACATGTTCTGTTGTGCccataggcacagatctaggatcaactTACCTTACCCAAGAGCATCAGAGGGTAAAGACAAAAACAGACCCTAGATCAGCGTCTAGGCCGGGGCAGCTTCATCCTAGTGTGCATCACACACCTGACACATATAACATCACACAGAGTGACATCAGCACCATGTTTTGGGGTTTGGGGTTTGGGCTGGGAGATGTTGCGTAAGCAGTAACTGCATGGTAGGCTTTGATAGAGAGAGAACGTGCACCATATTTActacagacagaaaacacatagGCAAACCTCATTCCACATAGCAACTATTGTAtgtacagtcctctcctctgttaGCCTACATCCAgcttgttagagagagagagggagagagagagagagagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2050564 lncRNA upstream 86347 24433033 ~ 24433266 (+) True G1791530
TU2050539 lncRNA upstream 132803 24386582 ~ 24386810 (+) True G1791505
TU2050537 lncRNA upstream 133392 24385899 ~ 24386221 (+) True G1791503
TU2050535 lncRNA upstream 135053 24384299 ~ 24384560 (+) True G1791501
TU2050527 lncRNA upstream 138090 24381186 ~ 24381523 (+) True G1791493
TU2050636 lncRNA downstream 3815 24559514 ~ 24559716 (+) True G1791594
TU2050645 lncRNA downstream 11203 24566902 ~ 24567138 (+) True G1791603
TU2050741 lncRNA downstream 155262 24710961 ~ 24777461 (+) True G1791694
TU2050745 lncRNA downstream 157905 24713604 ~ 24718483 (+) True G1791697
TU2051079 lncRNA downstream 270666 24826365 ~ 24826642 (+) True G1792014
XM_036958965.1 mRNA upstream 96546 24406950 ~ 24423067 (+) False LOC110501605
XM_021579289.2 mRNA upstream 96546 24406951 ~ 24423067 (+) False LOC110501605
XM_021579873.2 mRNA upstream 194856 24264331 ~ 24324757 (+) True LOC110501999
XM_021579928.2 mRNA upstream 362229 24148044 ~ 24157384 (+) True rab20
XM_021579932.2 mRNA upstream 381688 24129070 ~ 24137925 (+) True LOC110502026
XM_021579293.2 mRNA downstream 292815 24848514 ~ 25008393 (+) False LOC110501609
XM_021579295.2 mRNA downstream 599398 25155097 ~ 25162839 (+) False LOC110501611
XM_021579296.2 mRNA downstream 600675 25156374 ~ 25162839 (+) True LOC110501611
XM_021579302.2 mRNA downstream 637736 25193435 ~ 25223476 (+) False LOC110501614
XM_036958973.1 mRNA downstream 637737 25193436 ~ 25223476 (+) False LOC110501614
TU2050548 other upstream 108900 24394068 ~ 24410713 (+) True LOC110501605
TU2049772 other upstream 400138 24118562 ~ 24119475 (+) True G1790805
TU2049337 other upstream 1087230 23416093 ~ 23432383 (+) True G1790442
TU2047594 other upstream 2519990 21998473 ~ 21999623 (+) True G1788815
TU2047590 other upstream 2523520 21995364 ~ 21996093 (+) True G1788811
TU2051105 other downstream 287243 24842942 ~ 24843285 (+) True G1792040
TU2051120 other downstream 293267 24848966 ~ 24849344 (+) False LOC110501609
TU2051116 other downstream 451476 25007175 ~ 25013655 (+) True LOC110501609
TU2051751 other downstream 738847 25294546 ~ 25296557 (+) True G1792649
TU2052189 other downstream 1175627 25731326 ~ 25731754 (+) True G1793045

Expression Profile