RNA id: TU2073630


Basic Information

Item Value
RNA id TU2073630
length 216
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1812574
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42862126 ~ 42862341 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaacaaggttgatgaaatccaagCAAgtgtagcattccagagagacataagagactgtaacgttctttgcttcacggaaacatggctcactcgagacacgctattgTTGTcagtacagccagctggtttcttcacgcatcgcaccgacagaaacaaacatctttctggtaagaagagggggaggttatgccttatgattaacgagacgtggtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2073621 lncRNA downstream 4286 42857631 ~ 42857840 (-) True G1812565
TU2073586 lncRNA downstream 84577 42776165 ~ 42777549 (-) True G1812531
TU2073575 lncRNA downstream 112858 42748930 ~ 42749268 (-) True G1812523
TU2073568 lncRNA downstream 136426 42725200 ~ 42725700 (-) True G1812517
TU2073567 lncRNA downstream 137378 42724530 ~ 42724748 (-) True G1812516
TU2073645 lncRNA upstream 9510 42871851 ~ 42872125 (-) True G1812589
TU2073647 lncRNA upstream 11291 42873632 ~ 42873868 (-) True G1812591
TU2073649 lncRNA upstream 12373 42874714 ~ 42875584 (-) True G1812593
TU2073770 lncRNA upstream 22453 42884794 ~ 42885584 (-) True G1812707
TU2073819 lncRNA upstream 100281 42962622 ~ 42962859 (-) True G1812752
XM_021579756.2 mRNA downstream 38514 42801020 ~ 42823612 (-) True LOC110501899
XM_036959351.1 mRNA downstream 64634 42770253 ~ 42797492 (-) False LOC110501898
XM_036959352.1 mRNA downstream 64634 42770253 ~ 42797492 (-) True LOC110501898
XR_002470270.2 mRNA downstream 113549 42741258 ~ 42748577 (-) True LOC110501897
XR_005038839.1 mRNA downstream 113565 42741258 ~ 42748561 (-) False LOC110501897
XM_021579758.2 mRNA upstream 188063 43050404 ~ 43056474 (-) True LOC110501902
LOC110502158 mRNA upstream 197208 43059549 ~ 43067135 (-) True LOC110502158
XM_021579759.2 mRNA upstream 236991 43099332 ~ 43101649 (-) True LOC110501903
LOC110502159 mRNA upstream 291446 43153787 ~ 43159661 (-) True LOC110502159
LOC118943590 mRNA upstream 630944 43493285 ~ 43498392 (-) True LOC118943590
TU2073410 other downstream 184366 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 257106 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 472853 42386822 ~ 42389273 (-) True G1812079
TU2071948 other downstream 1256895 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 1396479 41447899 ~ 41465647 (-) True LOC110501886
TU2075666 other upstream 1648066 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 1811106 44673447 ~ 44673888 (-) True G1814480
TU2077141 other upstream 2976409 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 4363210 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 4538781 47401122 ~ 47402047 (-) True G1816929

Expression Profile