RNA id: TU2073770


Basic Information

Item Value
RNA id TU2073770
length 791
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G1812707
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42884794 ~ 42885584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATATCACAAATGCATTTCCTTCATTAGGCAAAATCAACCACAACTTCATGGATGACAGGCGAGTATACCCTTCATTCAACAGCAACAATACTTTCATatggctgtgcattatcataatAAACAACTATATCcctaaataaaatgtatgtatgtGCTTTGTAGCCTAAAGCCAAGGCGCCGGTTATCAAAATGTCCATTCACGCACTATAGTAGTCAGTGATGTAAATTAGAACATTACAGTTTTGCATAATACAGAATTACATGTGTTCTTCTTATCCACTTGATATGGTTTATTATGCCATGACTATACCCACTTAACGACTGTGTtcaatacatcattatattgaCAGGTAGCACTGACATTTTACATTCCCTTCTTACCTGACGTTTCTTGCAGAGGAACATTTTCAAAGCTGAAGCCTTTTGCGATAGAAGCTTGTCTAACCTCACTGCAGTTATGTGCTTTAAAATCTGCTCCAGTGACAACGGACAGCGCCACAGATAAAGTCCATAGGACGGTCCGTATTCCCAACATCGTGCACTTCCGTGATTAATCCTTCTTTAATCCTCTGCAGATTCCCGTTTGTAGAGGAACTCCCACTGCAGTGCATCCGGACGTAGTAGGTACTAACAACTCAATATCTAATGATTACCACTTTTCTACAACTGTCTATCATAACATCTTTCTCAATCAAAATCTGTTTATTTTTGCCAACGATGGTAGACGGTCCTGCGTTGACGCAAAAACAGATTGTTGTTGTGAGTCCAGGTAAAACCACATGGATCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2073649 lncRNA downstream 9210 42874714 ~ 42875584 (-) True G1812593
TU2073647 lncRNA downstream 10926 42873632 ~ 42873868 (-) True G1812591
TU2073645 lncRNA downstream 12669 42871851 ~ 42872125 (-) True G1812589
TU2073630 lncRNA downstream 22453 42862126 ~ 42862341 (-) True G1812574
TU2073621 lncRNA downstream 26954 42857631 ~ 42857840 (-) True G1812565
TU2073819 lncRNA upstream 77038 42962622 ~ 42962859 (-) True G1812752
TU2073833 lncRNA upstream 98787 42984371 ~ 42984662 (-) True G1812766
TU2073837 lncRNA upstream 104156 42989740 ~ 42989947 (-) True G1812770
TU2073842 lncRNA upstream 111875 42997459 ~ 42997665 (-) True G1812775
TU2073849 lncRNA upstream 125601 43011185 ~ 43011419 (-) True G1812782
XM_021579756.2 mRNA downstream 61182 42801020 ~ 42823612 (-) True LOC110501899
XM_036959351.1 mRNA downstream 87302 42770253 ~ 42797492 (-) False LOC110501898
XM_036959352.1 mRNA downstream 87302 42770253 ~ 42797492 (-) True LOC110501898
XR_002470270.2 mRNA downstream 136217 42741258 ~ 42748577 (-) True LOC110501897
XR_005038839.1 mRNA downstream 136233 42741258 ~ 42748561 (-) False LOC110501897
XM_021579758.2 mRNA upstream 164820 43050404 ~ 43056474 (-) True LOC110501902
LOC110502158 mRNA upstream 173965 43059549 ~ 43067135 (-) True LOC110502158
XM_021579759.2 mRNA upstream 213748 43099332 ~ 43101649 (-) True LOC110501903
LOC110502159 mRNA upstream 268203 43153787 ~ 43159661 (-) True LOC110502159
LOC118943590 mRNA upstream 607701 43493285 ~ 43498392 (-) True LOC118943590
TU2073410 other downstream 207034 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 279774 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 495521 42386822 ~ 42389273 (-) True G1812079
TU2071948 other downstream 1279563 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 1419147 41447899 ~ 41465647 (-) True LOC110501886
TU2075666 other upstream 1624823 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 1787863 44673447 ~ 44673888 (-) True G1814480
TU2077141 other upstream 2953166 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 4339967 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 4515538 47401122 ~ 47402047 (-) True G1816929

Expression Profile