RNA id: TU2073647


Basic Information

Item Value
RNA id TU2073647
length 237
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1812591
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42873632 ~ 42873868 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctgcagtggagcaggaggAAAGAATCAAGTTTTCTGCATCCACATCAcgaaggatctatcatggtccacacacaccaacacagttgtgaagagggcacgacaatgcctcttccccctcaggaggctgaaaagaatTGGCACGGGCCTCAAAAACctctgagagcatcttgactggatgCACCATCgcttggaatggcaactgcttgtCATCCTACCGTAAAGCTCTACATAGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2073645 lncRNA downstream 1507 42871851 ~ 42872125 (-) True G1812589
TU2073630 lncRNA downstream 11291 42862126 ~ 42862341 (-) True G1812574
TU2073621 lncRNA downstream 15792 42857631 ~ 42857840 (-) True G1812565
TU2073586 lncRNA downstream 96083 42776165 ~ 42777549 (-) True G1812531
TU2073575 lncRNA downstream 124364 42748930 ~ 42749268 (-) True G1812523
TU2073649 lncRNA upstream 846 42874714 ~ 42875584 (-) True G1812593
TU2073770 lncRNA upstream 10926 42884794 ~ 42885584 (-) True G1812707
TU2073819 lncRNA upstream 88754 42962622 ~ 42962859 (-) True G1812752
TU2073833 lncRNA upstream 110503 42984371 ~ 42984662 (-) True G1812766
TU2073837 lncRNA upstream 115872 42989740 ~ 42989947 (-) True G1812770
XM_021579756.2 mRNA downstream 50020 42801020 ~ 42823612 (-) True LOC110501899
XM_036959351.1 mRNA downstream 76140 42770253 ~ 42797492 (-) False LOC110501898
XM_036959352.1 mRNA downstream 76140 42770253 ~ 42797492 (-) True LOC110501898
XR_002470270.2 mRNA downstream 125055 42741258 ~ 42748577 (-) True LOC110501897
XR_005038839.1 mRNA downstream 125071 42741258 ~ 42748561 (-) False LOC110501897
XM_021579758.2 mRNA upstream 176536 43050404 ~ 43056474 (-) True LOC110501902
LOC110502158 mRNA upstream 185681 43059549 ~ 43067135 (-) True LOC110502158
XM_021579759.2 mRNA upstream 225464 43099332 ~ 43101649 (-) True LOC110501903
LOC110502159 mRNA upstream 279919 43153787 ~ 43159661 (-) True LOC110502159
LOC118943590 mRNA upstream 619417 43493285 ~ 43498392 (-) True LOC118943590
TU2073410 other downstream 195872 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 268612 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 484359 42386822 ~ 42389273 (-) True G1812079
TU2071948 other downstream 1268401 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 1407985 41447899 ~ 41465647 (-) True LOC110501886
TU2075666 other upstream 1636539 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 1799579 44673447 ~ 44673888 (-) True G1814480
TU2077141 other upstream 2964882 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 4351683 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 4527254 47401122 ~ 47402047 (-) True G1816929

Expression Profile