RNA id: TU2075147


Basic Information

Item Value
RNA id TU2075147
length 1504
lncRNA type intronic
GC content 0.43
exon number 2
gene id G1813904
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43424697 ~ 43426993 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTAGgaaaagggttatggttaggctACAGTTGTCAATAGCTGTTGTCCCCCGACTCTCTATTTACAAGCACAAattgatgctggcactaagaccacaatTGACGAGCtctatagggccataagcaaacaagaacatGCACATCCCCAGGCAGCTCTTCTCGTGGCCGGGGATTTTTCATGCAGGGAAATTGGAATCTGTTAACTTCATTTaataccagcatgtcacctgtgcaactagaggcgaaaaaactctagatcatctttactctacacacagaaatgcatacaaggctctccttcaccttttctttttcaaatctgaccataactttatcctcctgtttacaaacaaaaactcaaacaggaagtaccagtgactcaatGTGGAAGGGGTCCggtgaagcggatgctaagctacaggactgcgTATACCTCCaatacattgatctggtactggtactccctgtagttatagctctacattgatctggtactggtactccctgtatatagctctacattgatctggtactggtactccctgtatatagctccatattgatctggtactggtactccctgtatatagcttcatattgatctggtactggtactccctgtatatagctccatattgatctggtactggtactccctgtatatagctccatattgatctggtactccctgtatatagctccatattgatctggtactggtactccctgtatatagcctccacattgatctggtactggtactccctgtatatagctccacattgatctggtactggtactccctgtatatagctccatattgatctggtactggtactccctgtatatagctccatattgatctggtactggtactccctgtatatagctccacattgatctggtactggtactccctgtatatagctccatattgatctggtactggtactccctgtatatagctccatattgatctggtactggtactccctgtatatagctccatattgatctggtactggtactccctgtatatagctccatattgatctggtactggtactccctgtatatagctccatattgatctggtactggtactccctgtatatagccccacattgatctggtactggtactccctgtatatagccccatattgatctggtactggtactccctgtatatagctccatattgatctggtactggtactccctgtatatagccccacattgatctggtactggtactccctgtatatagccccacattgatctggtactggtactccctgtatatagccccacattgatctggtactccctgtatatagctccatattgatctggtactggtactccctgtatatagctccatattgatctggtactggtactccctgtatatagctccatattgatctggtactggtactccctgtatatagccccacattgatctggtactggtacttacTGTTCTGTATGTATCTTCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2075138 lncRNA downstream 11573 43412916 ~ 43413124 (-) True G1813898
TU2075137 lncRNA downstream 12477 43411914 ~ 43412220 (-) True G1813897
TU2075132 lncRNA downstream 16801 43407673 ~ 43407896 (-) True G1813892
TU2075131 lncRNA downstream 18789 43405402 ~ 43405908 (-) True G1813891
TU2074066 lncRNA downstream 252916 43171568 ~ 43171781 (-) True G1812976
TU2075150 lncRNA upstream 1134 43428127 ~ 43486337 (-) True G1813905
TU2075199 lncRNA upstream 70797 43497790 ~ 43498288 (-) True G1813950
TU2075202 lncRNA upstream 74825 43501818 ~ 43502253 (-) True G1813953
TU2075203 lncRNA upstream 75308 43502301 ~ 43502577 (-) True G1813954
TU2075205 lncRNA upstream 77654 43504647 ~ 43504901 (-) True G1813956
LOC110502159 mRNA downstream 265036 43153787 ~ 43159661 (-) True LOC110502159
XM_021579759.2 mRNA downstream 323048 43099332 ~ 43101649 (-) True LOC110501903
LOC110502158 mRNA downstream 357562 43059549 ~ 43067135 (-) True LOC110502158
XM_021579758.2 mRNA downstream 368223 43050404 ~ 43056474 (-) True LOC110501902
XM_021579756.2 mRNA downstream 601085 42801020 ~ 42823612 (-) True LOC110501899
LOC118943590 mRNA upstream 66292 43493285 ~ 43498392 (-) True LOC118943590
XM_021580017.2 mRNA upstream 158966 43585959 ~ 43587743 (-) True LOC110502160
XM_021580018.2 mRNA upstream 184556 43611549 ~ 43612567 (-) True LOC110502161
XM_036959595.1 mRNA upstream 240910 43667903 ~ 43669453 (-) True LOC118943640
XM_036959079.1 mRNA upstream 253676 43680669 ~ 43681964 (-) True LOC118943591
TU2073410 other downstream 746937 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 819677 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 1035424 42386822 ~ 42389273 (-) True G1812079
TU2071948 other downstream 1819466 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 1959050 41447899 ~ 41465647 (-) True LOC110501886
TU2075666 other upstream 1083414 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 1246454 44673447 ~ 44673888 (-) True G1814480
TU2077141 other upstream 2411757 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 3798558 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 3974129 47401122 ~ 47402047 (-) True G1816929

Expression Profile