RNA id: XM_021596121.2


Basic Information

Item Value
RNA id XM_021596121.2
length 2732
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC110518657
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42548349 ~ 42551080 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCGATTTTTCATAGATAAGgtcagagctagtaagggggGAAAAGTCTAGTGTAAGTTAATGAAAATcctttgggggggggcacagaaCCATATAGAATTTCTTTGTATGCTGtaccgttaagatttcccttcactggaaccaagGGGCCTTGGCCGAGCCATGAAAAATATCCCCATTATTCCTCCTTGacaaaactttacagttagcactatccataccttcagcactcggtggtcctaTTCTGTGAGccttgtggcctaccacttcgcggctgagccgttgttgctcttagacatttccacttcacaataacagcacttacagttgacactcaaacctcaaaagtggtctcctgatgtggtttaagcattgttatgGACTTAGATAATACAATTGCGTTGTTTTCTGTAAGAAAAAGTGTAACAGAACGAAAACCTTACAGAAATGGGGAAAAATCTGAAACCTGTGAATTTGTGACTCAGTTGGCAGCCTCATTTATCTGTTTCAGTAGTAGGCCTACTATTAGCCTACTGCACAGTACAGCATGGGTTGGtctgactgtgaaagaccaatatgggattcaACATTTTAGGTAATTCATAGTGTATGTCACTGTTTCTCATATATTTCCACACAGGGCGCCTTTCCTTCGCCGGACGAGCCCTTTGGTAAAATgagagtatacccacttctccaggcaccactacagCTGGTTAAATATGTAGGTTAAATATGTAGCATCAAATATGGTCAAGAATATTGAGTTCTCTGAACTCGCTACTGATTCTCTGTTGGAGGGATTTACATGTCAACTTTGGTTCAAGTTTATTCGTGTTCTTTGGACCGTGAGATTTTCTGAAGCTCCTGGGTAGAATTTGCTTAAAAGATGCAGCCATTATTTGACTGCGGTGTTCCTTTTTAGGCAATGTGTGTACAGGGCCCTTACTCTATTTTCTTACCCTGAATCTTCACATCCACTTTCAAAGTCTCTCCCCTCTGACGCTGTCCTTCAATTCATTTAGAGAAGGCGAGGAAAGAGGATGTGGCCAATCAGAAAACCTATGAGGAAGAGCCATGGATTGGTTGGCTAGATTAAGGAGGCACTCTGATTGGTGGGCTGTGTGGACACATGAGAGGGGGCCAGTAGAGTAGCAGCAGGTTCATAAtatcagcagcagcagtggggtCAGCTCCGCTCCACACCTACTGAGCACTGGGGCATCATGCAGAGGAAGAGTAGCTTCACTGGTCTCCTCATCACTGCTCTGTGTGCAGTGGCCTCTGGTAAACTCAGAGAATATCACTATGTGTCTGAAGAGAAGACCTGGTCAGAGGCTCAGCAGTACTGTCAGGAGCACTACACTGACCTGGCCTTCATCAGCAACCAGGAAGAAGTATATCAGCTCCTTCCCATTTCAAGGGGTGATTGGACCTGGATTGGTTTGCACAGAGATGCTAACGACCCAACAGGATGGACATGGTCAGGAGGAGAGAACTCAGCATTTAGGTTTTGGAAGTCAGGAGAGCCAAACAATGCTGGTGGCATTGAGGACTGTGTCATGGTACAGTGGGATATGAGATGGATGGATTCGCTTTGCTCCCGGACACTCCCCTTCTTATGCTACAAGGAGAAGCTGATCCTGGTTCAGGAGATGAAGACGTGGGAGGAGGCTCTGGAGTACTGCAGGGGTCACTACACCGACCTCCCCAGCCTACTCTCTAAGACTGAACATCTCCAGGCCCAGAGCAAGATAGAGGGTGCCCAGACCGACCATGTGTGGACGGGTCTGATCTTCCTGGCCAGAGAATGGCTCTGGGTGAACGGGGACCACCTGGAGTACCAGGCCTGGTCTGGCGGGAAGCTGCCCCACTGCCCCGCTCAATACCTCCACTGTGGGACCCTGACCAGAGATGGAGAGCACTGGGGAACCAGGAactgtgaggagaggaggaacttCCTCTGCTACAGAGCGTGAGCcccagaggagagagatattactgtagtagatatgattATCTATGGATGCTCTCTACTTATTACAAGTTAACGCTGTGATTGGTTATTCACCCTATTTACTTGTTGATGCATATAAACCTATTGGGTTTAACccacggggcggcaggtagcctagcgattagagcgttgggccagtaaccaaaagattgCTGGTTTGAATATCTGAGCCgaaaaggtgaaaaatctgttgatgtgccctttaGCAGGACACTGAACCCTACTGTGCTCCAGCGACGCCGTACTacaatggctgaccctgtaaaacaacacaattccTGCACCTTTCTGGtctatgtgacaataaaacatttttttttttgtgtgtgttttctacaATAGTCTACTATTTTTCTTCCTGTAGATACCGTGGTTATGATAGTGGGTGCTTTGTGTGTACAAAGACCATAACACTGGGCACAGATaacactgggcacagatgtcagttcaatgtctagttttgataacatttaattgagttggtaattaacttattttttttacgATGTCATTCGATTTAGGTAGGGTAAAATAATATAGACAAGAAATCACGGAATTCCTTCAGGTTGATGACtctgcaaatccaatcagttttcctcTTTGATTCATCCCCATCAGAATGAGAAACAGTAACAGTAGATATGAACGTACACATCATGTATTGAATATCATGTAAGGAAACCAACTGTTggtatgaaataaataaataacttagA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2323473 lncRNA downstream 24261 42523870 ~ 42524088 (-) True G2031323
TU2323468 lncRNA downstream 40002 42508116 ~ 42508347 (-) True G2031318
TU2323459 lncRNA downstream 60715 42470669 ~ 42487634 (-) True G2031309
TU2323434 lncRNA downstream 85986 42461976 ~ 42462363 (-) True G2031287
TU2323456 lncRNA downstream 89558 42458567 ~ 42458791 (-) True G2031307
TU2323492 lncRNA upstream 6272 42557352 ~ 42557581 (-) True G2031342
TU2323515 lncRNA upstream 36521 42587601 ~ 42587854 (-) True G2031357
TU2323482 lncRNA upstream 37258 42588338 ~ 42588647 (-) True G2031332
TU2323751 lncRNA upstream 40193 42591273 ~ 42591501 (-) True G2031518
TU2323752 lncRNA upstream 40495 42591575 ~ 42591865 (-) True G2031519
XM_021607810.2 mRNA downstream 21884 42524581 ~ 42526465 (-) False LOC110526670
XM_021607811.2 mRNA downstream 21884 42524583 ~ 42526465 (-) True LOC110526670
XM_036963722.1 mRNA downstream 31976 42512280 ~ 42516373 (-) True LOC110506854
XM_036963238.1 mRNA downstream 38736 42462581 ~ 42509613 (-) True LOC110506162
XM_036963237.1 mRNA downstream 46245 42462581 ~ 42502104 (-) False LOC110506162
XM_036963862.1 mRNA upstream 132 42551212 ~ 42554425 (-) False LOC110526673
XM_021607813.2 mRNA upstream 132 42551212 ~ 42554509 (-) True LOC110526673
XR_005039697.1 mRNA upstream 13169 42564249 ~ 42565687 (-) False LOC118944434
XR_005039698.1 mRNA upstream 13169 42564249 ~ 42565690 (-) True LOC118944434
XM_036963166.1 mRNA upstream 52671 42603751 ~ 42608866 (-) True LOC118944394
TU2323433 other downstream 87034 42459257 ~ 42461315 (-) True G2031286
TU2323389 other downstream 178440 42368254 ~ 42369909 (-) True G2031259
TU2323351 other downstream 201624 42343282 ~ 42346725 (-) False G2031225
TU2323493 other upstream 6717 42557797 ~ 42558903 (-) True G2031343
TU2323769 other upstream 65164 42616244 ~ 42621546 (-) True LOC110513924
TU2324292 other upstream 633556 43184636 ~ 43185724 (-) True G2031974
TU2324286 other upstream 640618 43191698 ~ 43197828 (-) True LOC110506858
TU2324491 other upstream 1018080 43569160 ~ 43570054 (-) True G2032150

Expression Profile