RNA id: TCONS_00055168


Basic Information

Item Value
RNA id TCONS_00055168
length 700
RNA type mRNA
GC content 0.51
exon number 3
gene id XLOC_028412
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2060524 ~ 2196928 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAGCACAGCCTGCAACAGCACACAGGGGGAGCTGTGTATCGGACAGAGCCGAGGACTGGAGAGACATCGCTCAGTGCTGTCGGCTGACTGCAGCGCAGGAAGTGACATCAGCATGTCTCCAGAGGAGCGCATGCCCATGCGTCACTCCAGCGTCCGTGAACAGGACCATCACACAGAGGGCACGTGTTTCCTGCTAGCCCCCAGCGACTACACCTGCACCGCAGACGCAGCCATACGGAAAACAGCCACTGTTTCTCCCCTGGCCGATGTTCAGTTTATATCAGCCAGAGACGGGGAGGGCGGAGCCAGCAGAGACTCTGATGGATTTGACGAACTGGATTGGACGGTCTGGAATAGAATAAGCCTGTGATTGGACGGTTCTCATAGATGGACATCTTCATCCAACGGACTGGATTTTCCTGTGTGAAAGTCGAaagaaacaaatgtaaaaatcctGACGTGGATCTAGTGAAACGTGCTTCAATCCGGCGGGCTCTCCATTTTAAATGTGGCATCTGTATAAAAGGACACACATTCACGCGTGGCTTCCCTCTGTGTCAGGTAGCAAATCCAGCACCCTTTTCCAGGCCTCTGTCAGTGCAATAAGTGTATTACGATGTGTAGAGGCACAAGTGTTGAACTCGAGTATTAGTGTATCGACTTTTCTGAACTACACCATAGAGCGAGAGAGACTATAAC

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0032590 dendrite membrane cellular_component
GO:0030424 axon cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0032809 neuronal cell body membrane cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function
GO:0005251 delayed rectifier potassium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG:

id description
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-070410-118 Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in axon; dendrite membrane; and neuronal cell body membrane. Predicted to be integral component of membrane. Orthologous to human KCNC2 (potassium voltage-gated channel subfamily C member 2).

Ensembl:

ensembl_id ENSDART00000148900

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055164 lncRNA downstream 98871 2045406 ~ 2052508 (-) False XLOC_028411
TCONS_00057986 lncRNA downstream 172322 1942033 ~ 1979057 (-) False XLOC_028408
TCONS_00057985 lncRNA downstream 172392 1916275 ~ 1978987 (-) False XLOC_028408
TCONS_00057987 lncRNA downstream 176315 1974147 ~ 1975064 (-) True XLOC_028408
TCONS_00057308 lncRNA downstream 234813 1915786 ~ 1916566 (-) False XLOC_028408
TCONS_00057309 lncRNA upstream 229384 2392072 ~ 2397407 (-) False XLOC_028417
TCONS_00057988 lncRNA upstream 283069 2445757 ~ 2479720 (-) False XLOC_028418
TCONS_00057989 lncRNA upstream 285151 2447839 ~ 2479720 (-) True XLOC_028418
TCONS_00057310 lncRNA upstream 501480 2664168 ~ 2666870 (-) True XLOC_028422
TCONS_00057990 lncRNA upstream 1088086 3250774 ~ 3257564 (-) True XLOC_028427
TCONS_00055163 mRNA downstream 92077 2045132 ~ 2059302 (-) False XLOC_028411
TCONS_00055162 mRNA downstream 92083 2045132 ~ 2059296 (-) False XLOC_028411
TCONS_00055160 mRNA downstream 92146 2041067 ~ 2059233 (-) False XLOC_028411
TCONS_00055165 mRNA downstream 98662 2051188 ~ 2052717 (-) True XLOC_028411
TCONS_00055161 mRNA downstream 98692 2045132 ~ 2052687 (-) False XLOC_028411
TCONS_00055171 mRNA upstream 47629 2210317 ~ 2219705 (-) True XLOC_028413
TCONS_00055172 mRNA upstream 96247 2258935 ~ 2265271 (-) True XLOC_028414
TCONS_00055173 mRNA upstream 186647 2349335 ~ 2350371 (-) True XLOC_028415
TCONS_00055174 mRNA upstream 192204 2354892 ~ 2380173 (-) True XLOC_028416
TCONS_00055175 mRNA upstream 233336 2396024 ~ 2440175 (-) True XLOC_028417
TCONS_00055131 other downstream 1202537 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 1342926 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 1465960 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055185 other upstream 512418 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 2329878 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 2383521 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 2767723 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 3207368 5370056 ~ 5371622 (-) True XLOC_028470

Expression Profile

//