RNA id: TU2414643


Basic Information

Item Value
RNA id TU2414643
length 280
lncRNA type intronic
GC content 0.42
exon number 1
gene id G2111462
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 17714766 ~ 17715045 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGTGTTGCTGGCGAAAGTCGGAGGGTGACGTATATAAAGTGGCGAGGGGATCAATAAACGCAACTTCGGGACACACTGGCGACTTGTATGATGCAATTCCAAATGTAATAATAAAACAAGCATGAAATTCTAATGAACTAATTCCCCCTATGGTTTCACAAGATATAAACCTCAGCAACAGTTAGGCTACCTCCCAAATGAAGTGGTTATTTCACCTGTTTTACCTGTCAAGACTCAAGATCAGACAAACAAACATGAGTCAGAGGATTAGTCATGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2414639 lncRNA upstream 5570 17708973 ~ 17709196 (+) True G2111458
TU2414628 lncRNA upstream 26787 17687602 ~ 17687979 (+) True G2111447
TU2414624 lncRNA upstream 33973 17680545 ~ 17680793 (+) True G2111443
TU2414625 lncRNA upstream 34744 17679722 ~ 17680022 (+) True G2111444
TU2414400 lncRNA upstream 408222 17305396 ~ 17306544 (+) True G2111232
TU2414648 lncRNA downstream 4717 17719762 ~ 17720061 (+) True G2111465
TU2414656 lncRNA downstream 13866 17728911 ~ 17729307 (+) True G2111473
TU2414659 lncRNA downstream 18938 17733983 ~ 17734272 (+) True G2111476
TU2414661 lncRNA downstream 23423 17738468 ~ 17738881 (+) True G2111478
TU2414671 lncRNA downstream 35458 17750503 ~ 17750949 (+) True G2111488
XM_036966199.1 mRNA upstream 160779 17497781 ~ 17553987 (+) True LOC110508652
LOC110508651 mRNA upstream 225276 17480111 ~ 17489490 (+) True LOC110508651
XM_036966142.1 mRNA upstream 304103 17402117 ~ 17410663 (+) False LOC110508649
XR_005040240.1 mRNA downstream 98804 17813849 ~ 17824722 (+) True LOC118944855
XM_021589344.2 mRNA downstream 152683 17867728 ~ 17986867 (+) False LOC110508657
XM_036966513.1 mRNA downstream 182215 17897260 ~ 17986867 (+) False LOC110508657
XM_036966511.1 mRNA downstream 195482 17910527 ~ 17986867 (+) True LOC110508657
XM_021588579.2 mRNA downstream 510267 18225312 ~ 18228347 (+) False gs04
TU2414638 other upstream 6137 17708256 ~ 17708629 (+) True G2111457
TU2414472 other upstream 298534 17411144 ~ 17416232 (+) True G2111300
TU2414198 other upstream 755914 16953784 ~ 16958852 (+) True G2111044
TU2414093 other upstream 901970 16812594 ~ 16812796 (+) True LOC110508278
TU2413642 other upstream 1266264 16448112 ~ 16448502 (+) True G2110507
TU2414674 other downstream 39892 17754937 ~ 17755581 (+) True G2111491
TU2415395 other downstream 188153 17903198 ~ 17903924 (+) True G2112127
TU2416413 other downstream 952070 18667115 ~ 18668496 (+) True G2113059
TU2416973 other downstream 1361032 19076077 ~ 19076418 (+) True G2113578
TU2417581 other downstream 1908423 19623468 ~ 19636753 (+) True LOC110508695

Expression Profile