RNA id: XM_036966199.1


Basic Information

Item Value
RNA id XM_036966199.1
length 4123
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110508652
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 17497781 ~ 17553987 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACACAAGAAATACCTCACCAGCAAAGCAGCAAAGAGTGTACAACAGGCAGCAATTGTGGCATACATTCCTCACTCAAAACGTCTCTCTGTATGCGTAAAACGCCGCTGGAATAGTTTTCGGTATCATATTCTGGATGCATGCGACGTTGACCTTCATATGTAGATTTTCGGTCATGTATTTGTAGTGTACATTATGTGCATATGGAGAATATTTTTTATCTCTTCCGTATTTCTGGCTGTCTAGATTTGGAGTCTACAGAGAAGGGAACTGTCGCCACTTTTTGACCAACGCTTCGAATATTTTATTTTGAGAGCACAATTGGGAACATTTGGAAATTCTGACGTGGTTTATATTTGGACTTTTCACGGTTTCAGCCTAGTTGGGTGAAGGGGCCGTTTTTCAATCCACGAATATCGCTCCCTTTCCAGTGTTTCGTTTTGCACCGTTCAATTGTAGGCGGCTATCCTAAAAACTTGGAACAGAACATTTTCTCAGAAATACACTTTTCGTTTGATCTGGTGTATTGTGCGATGCAGTGCATATATACAATTATGATGTATTATTCTTAAAAACGAGGATTTTGGAGGTCATCAGTGGCAATCATAATGGCAAACGACGACAACCGCTTTATAGTGGAAAAGTACATTTGTCACAAACTCTTGAAACGAGGATATGCGTGGGATTTCGAGGatgcagaggaggaggaaggtgctGCTAATAATGGGTCGATGATTTCTCCTCGGCCGGGTTTGGCACGGCGGTGCCACGGGGCCAATAACGCCGGACCGGGCAGCGTCCCTCGTCTTTCCAAATGGCTCTCCCAACCGGACCCGCATGCAGCTATTCACAGAGTTTTGCGTGAGGCCGGGGACGAACTCGAAAGACTGTACCAGCCCGACTTCGCAGAGATGTCACACCAGCTGTATCTTACATCCTCCACGGCTGAGAGGAGATTTAGAGAGGTGATAGACGAGCTGTTCAGGGATGGGGTTAACTGGGGACGGATTATCGCCTTCTTCGAGTTCGGGGGCACAATATGCGTGGAATGCGTGAACAAGGAGATGACGTCGCAGGTGGATCACATCGCGGTGTGGATGACAGAGTATCTAAATGGACCACTGCTCAACTGGATTCAGGAGAACGGGGGATGGgaggccTTTGTTGAGCTctatgacagacagagggactcGGTGTTCTGTTCGTGGCCGTCCATCAAGACCGTCTTCGGCCTGGCTGCACTGGGGGCCGCAAGCCTTACAATCGGAGCATACCTTACACAGAAGTGAAGGagttctccttttctctccctctctttttgtcctccctccctcttgctaCTTTCTCTTTTCAAAGGCAACTCTGCCCCCTCCGAGACGATCCCGAATCCCCAACCTGCATGTCTtcaaagcctctctctctctctttctctccctgttctcgAAAAAACAGCCCTCTTTCTTAACCCTCACTTCATAAAACAAAGGCCCAAATCAAACAACAGCAGGAAACAGAGTCACTGCCCAGACAGAAGAAAACATGTCATGAAACAGTCACTGCCCACACAGAAGAAAACATGTCATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGAGTCACTGCCCACACAGAAGAAAACATGTCATGAAACAGAGTCACTGCCCAGACAGAAGAAAACATGTCATGAAACAGTCACTGCCCACACAGAAGAAAACATGTCATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTAATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTAATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTAATAAAACAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGAGTCACTGCCCACACAGAAGAAAACATGTCATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTAATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTAATAAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGTCACTGCCCTCAGAGAAGAAAACATGTCATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTAATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTAATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTAATAAAACAGTCACTGCCCACAGAGAAGAAAACATGTAATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTATTAAAACAGTCACTGCCCACAGAGAAGAAAACATGTATTAAAACAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTAATAAAACAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACGGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGAGTCATTGCCCACAGAGAAGAAAACATGTCATGAAACGGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGAGTCATTGCCCACAGAGAAGAAAACATGTCATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGAGTCACTGCCCACAGAGAAGAAAAAAATGTCATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTAATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTAATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTAATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTAATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTAATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTAATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTAATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTAATAAAACAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTAATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTAATGAAACAGAGTCACTGCCCACACAGAAGAAAACACGTAATGAAACAGACACTGCCCACAGAGAAGAAAACATGTAATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTAATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTAATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTAATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTAATGAAACAGAGTCACTGCCCACAGAGAAGAAAACATGTCATGAAACAGTCACTGCCCACAGAGAAGAAAACATGTAATGAAACAGTCACTGCCCACAGAGAAGAAAA

Function

GO: NA

KEGG:

id description
K02161 BCL2; apoptosis regulator Bcl-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2414400 lncRNA upstream 191237 17305396 ~ 17306544 (+) True G2111232
TU2414368 lncRNA upstream 232654 17261799 ~ 17265127 (+) True G2111203
TU2414315 lncRNA upstream 320124 17177418 ~ 17177657 (+) True G2111155
TU2414151 lncRNA upstream 572094 16923288 ~ 16925687 (+) True G2110998
TU2414155 lncRNA upstream 608514 16887540 ~ 16889267 (+) True G2111002
TU2414625 lncRNA downstream 125735 17679722 ~ 17680022 (+) True G2111444
TU2414624 lncRNA downstream 126558 17680545 ~ 17680793 (+) True G2111443
TU2414628 lncRNA downstream 133615 17687602 ~ 17687979 (+) True G2111447
TU2414639 lncRNA downstream 154986 17708973 ~ 17709196 (+) True G2111458
TU2414643 lncRNA downstream 160779 17714766 ~ 17715045 (+) True G2111462
LOC110508651 mRNA upstream 8291 17480111 ~ 17489490 (+) True LOC110508651
XM_021589332.2 mRNA upstream 87118 17397397 ~ 17410663 (+) False LOC110508649
XM_036966142.1 mRNA upstream 87118 17402117 ~ 17410663 (+) False LOC110508649
XM_021589334.2 mRNA upstream 87118 17402896 ~ 17410663 (+) False LOC110508649
XM_021589335.2 mRNA upstream 87118 17403175 ~ 17410663 (+) True LOC110508649
XR_005040240.1 mRNA downstream 259862 17813849 ~ 17824722 (+) True LOC118944855
XM_021589344.2 mRNA downstream 313741 17867728 ~ 17986867 (+) False LOC110508657
XM_036966513.1 mRNA downstream 343273 17897260 ~ 17986867 (+) False LOC110508657
XM_036966511.1 mRNA downstream 356540 17910527 ~ 17986867 (+) True LOC110508657
XM_021588579.2 mRNA downstream 671325 18225312 ~ 18228347 (+) False gs04
TU2414472 other upstream 81549 17411144 ~ 17416232 (+) True G2111300
TU2414198 other upstream 538929 16953784 ~ 16958852 (+) True G2111044
TU2414093 other upstream 684985 16812594 ~ 16812796 (+) True LOC110508278
TU2413642 other upstream 1049279 16448112 ~ 16448502 (+) True G2110507
TU2413068 other upstream 1548920 15948308 ~ 15948861 (+) True G2109955
TU2414638 other downstream 154269 17708256 ~ 17708629 (+) True G2111457
TU2414674 other downstream 200950 17754937 ~ 17755581 (+) True G2111491
TU2415395 other downstream 349211 17903198 ~ 17903924 (+) True G2112127
TU2416413 other downstream 1113128 18667115 ~ 18668496 (+) True G2113059
TU2416973 other downstream 1522090 19076077 ~ 19076418 (+) True G2113578

Expression Profile