RNA id: XM_021589334.2


Basic Information

Item Value
RNA id XM_021589334.2
length 3307
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC110508649
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 17397397 ~ 17410663 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACATTTCCCGGTCACGTGAGAATTCTAAGAGAATCAACTCCGTGTCTGTTAACGCGGAAgtgtattattttgtatttattaatgtATAGTTATTCAAAGATCTAATAAAAGGCTTGGATATCGACTTTGCCGGGCTGCAATTTAAGTATTAACAAATAAAGGGCCTGTtcgttgcatttttttttttttttttttacaagtaaTCATATGGCTGCCAACAACAATTTACAGAAAGCCATAGATCTGGCCAGCAAGGCGGCCCAGGAGGATAAAGCTCAGAATTACGACGAGGCCCTGCGTTTATACCAACAAGCTGTTCAGTACCTCCTACACGTAGTGAAATATGAATCCCAGGGCGATAAAGCCAAACAGAGCATCAGGGCCAAGTGTGCCGAGTACCTGGACAGAGCAGAGAAGCTCAAAGAATACCTAAAGAAGAAAGAGAAGGCTCCACCTACCAAGCCTGTGAAGGAGTCCCAAGCTGATGACAAAGGGAATGAGAGCGATGAAGGAGACAACCCAGAAAAAAAGAAGTTTCAGAACCAACTTTCAGGGGCTATCGTTATGGAAAAGCCAAATATCAAGTGGAATGATGTTGCCGGATTAGAGGGAGCCAAAGAGGCCCTGAAGGAAGCTGTTATTTTGCCAATCAAATTCCCACATCTTTTCACAGGCAAAAGAACGCCGTGGAGGGGGATCCTACTCTTCGGTCCTCCTGGAACAGGAAAGTCCTACCTGGCTAAAGCTGTGGCCACAGAGGCCAACAACTCCACCTTCTTTTCCATCTCCTCATCTGACCTGGTATCCAAGTGGCTGGGAGAGAGTGAAAAgttGGTAAAGAACTTGTTCACCCTTGCACGGGAGCACAAGCCCTCCATCATCTTCATAGATGAGATAGACTCGCTGTGCGGCTCCAGGAGTGAGAATGAGAGTGAGGCAGCTCGCCGCATCAAGACAGAGTTCCTAGTTCAGATGCAGGGGGTTGGGAATGACAACGATGGTGTACTGGTGCTCGGGGCCACCAACATCCCTTGGACGTTGGACTCTGCTATCAGAAGACGGTTTGAGAAGAGGATCTACATCCCCCTGCCCGAGGAACACGCCCGCACCTTCATGTTCAAGCTCCACCTGGGCGCCACCCCCACCAGCCTCAACGACTCTGACTTTGTCACCCTGGGAAAGAAGACAGACGGGTACTCAGGGGCTGACGTCAGCGTCATCGTCAGAGACGCGCTTATGCAACCAGTCAGAAAAGTTCAGTCAGCCACTCACTTCAAGCGGGTAAGAGGGCCATCGAGAGACAACCCCAACATCGTGGTAGATGACCTTTTGACCCCATGCTCTCCAGGAGACCCGAATGGCATCGAGATGACATGGATGGAAGTCCCTGGGGAAAAGCTATGTGAGCCAGTTGTTTGTATGTCTGATATGCTGAGATCCCTGACCAGCACAAAGCCAACAGTCAATGATCAGGATTTGGACAAACTGAGAAAATTCACAGAGGACTTTGGACAGGAGGGCTAAATTGGGTCATTTTAGCCAAACCAAAGCAAATATTATTGATTGTCAAgtgttccttctctcctctccgtctTTTTCCCACTCTCCCCCTCAGGCTCTGTTGGCTTATCACATGACTGCTCTActaatagaaatataattactagaacgGACCTCTCCATTTAAGTAATCTATTTCTTTGGCTCGACTGAGCTTGGTCCATTGGCCACAAGGGGTTAAACAAAGACGGGTATTTTCTTAGATGCTCCCCATGTCCAAAGGATTATGGATCTCTTCACATGTCTGAGGTAGACTAGATTGGTGAATGGAAAGCTACATGGCAATTAGGAACATTGGTGCAGCACCTTGGGCTGAATCCTAATATGTAAACAATGCTCAACTCGAGCATTTGCATACATCATGCTTTGAAGTCAATGAGAGTTTGATCTGGAAGTTGCCGATACAAGCATGTTAACAAAATCAGAATGCTTCTCTTTGTGTAGAGTGCTTATTTAACTTGCCCAATAAATATCTGAGCTAATTTTCCAATTACCCATCCAATTTCCTTCAATCAAATTGCACCTAACTTTTTAGTGTGAGCACCCATATATTCCACTTCTTTTTGTACAGGATATTTTTCAAATATTATTGGTGGAATTTATGACAGTCTCAAGGGGAAGAGAATTACATGGGTTTGGATACTTGAAGCACAGCAAatgtacaggtgtaggatcttaatttgatcactctgttgctgcaggaaatgcaaacttctGGTGTATTTAAGGTTTTTAAATACTTctcaagtttgtaatttccactttaaaatgtcagacttgatttgccctaaggaaaaatgtatcaacacctgttgttgcaggattattttcctgctctgAAGAACTGGTCATATTAAGATCCTGCGTCTGTATGTCATTCTACATACAGACATTTGTGGGGCTTCGGCTACGGTTAGAATAATTTACACACTCTGGATGGAGGTTGCTTTGGGAcatattttatatatacatttgtttTTCCCCTCCAGAAGAAAGGCTACTCTGTTCATTGTCATTATGATTCAAACTGTCAGGATCATCAACATTACTGGACCAGAAAAACCTTTATAATATAGTCACAGAttcaatactttttttccccctgaCCATCCACACACTCTACATGTAACCCTTTTGCTGATCTTCCTAACAAGAACTAGAAAGAGATGATGCCGTACTGAGATCCAGTCAAACTGTCTAACAGTGTTGAAGAAACAACGCGACTGATATGTTGGTGTGAATGGAATTTTGTGGGTAGCCTGAAATTGACATTTTAGGCACAAAAGAACACCCTCATGGCATCATGTCCTTTTTGTTATTGCATTGGAATGCAGTCCCAAGCAGGTACTTGGTTATTACCTTTTAAGATGTGGCCATTTTTAAGTGGCAATGCACACCATGTGCCTTCCAAACAAGTAGCAAGATCATAtacattgtttttttgtttggtttgttttttttatttggaaGTTGATATCCATTAAGACAGCTATATTGTGTATTTTGTCATTGATGCTATGGAATATATATTTGCACATTTCATGTAAACTGGCTTTAAGGTTGTATATCTCTGCTCTTAGTGTTGGCATTCTTAAGAATTTCAAGGTGTTGGGTACGTCTTTGGTGTGGTCTTCACTTTACTGTATAACATGTCTTGTAGAGAATGATACAGTATATCAGCGAGTGGAAAAGTCATCAGAATTCCTCTGCCGTGCATATGTAAATAAAAGTAATATTAAGATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2414400 lncRNA upstream 96352 17305396 ~ 17306544 (+) True G2111232
TU2414368 lncRNA upstream 137769 17261799 ~ 17265127 (+) True G2111203
TU2414315 lncRNA upstream 225239 17177418 ~ 17177657 (+) True G2111155
TU2414151 lncRNA upstream 477209 16923288 ~ 16925687 (+) True G2110998
TU2414155 lncRNA upstream 513629 16887540 ~ 16889267 (+) True G2111002
TU2414625 lncRNA downstream 269059 17679722 ~ 17680022 (+) True G2111444
TU2414624 lncRNA downstream 269882 17680545 ~ 17680793 (+) True G2111443
TU2414628 lncRNA downstream 276939 17687602 ~ 17687979 (+) True G2111447
TU2414639 lncRNA downstream 298310 17708973 ~ 17709196 (+) True G2111458
TU2414643 lncRNA downstream 304103 17714766 ~ 17715045 (+) True G2111462
XM_036966632.1 mRNA upstream 166298 17196785 ~ 17236598 (+) False LOC110508175
LOC110508651 mRNA downstream 69448 17480111 ~ 17489490 (+) True LOC110508651
XM_036966199.1 mRNA downstream 87118 17497781 ~ 17553987 (+) True LOC110508652
XR_005040240.1 mRNA downstream 403186 17813849 ~ 17824722 (+) True LOC118944855
XM_021589344.2 mRNA downstream 457065 17867728 ~ 17986867 (+) False LOC110508657
XM_036966513.1 mRNA downstream 486597 17897260 ~ 17986867 (+) False LOC110508657
TU2414198 other upstream 444044 16953784 ~ 16958852 (+) True G2111044
TU2414093 other upstream 590100 16812594 ~ 16812796 (+) True LOC110508278
TU2413642 other upstream 954394 16448112 ~ 16448502 (+) True G2110507
TU2413068 other upstream 1454035 15948308 ~ 15948861 (+) True G2109955
TU2413061 other upstream 1464039 15938511 ~ 15938857 (+) True G2109948
TU2414472 other downstream 481 17411144 ~ 17416232 (+) True G2111300
TU2414638 other downstream 297593 17708256 ~ 17708629 (+) True G2111457
TU2414674 other downstream 344274 17754937 ~ 17755581 (+) True G2111491
TU2415395 other downstream 492535 17903198 ~ 17903924 (+) True G2112127
TU2416413 other downstream 1256452 18667115 ~ 18668496 (+) True G2113059

Expression Profile