RNA id: XM_021599267.2


Basic Information

Item Value
RNA id XM_021599267.2
length 3805
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC110521599
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 25277789 ~ 25294301 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATAAGCAcgatgcgtttctatgggcttattttggatcTAAGCTTGTCGCCTTCCTTCATGACTTTCGGACAAccaactcccattgttagggcggagacatgagcatctcgtcattatatacagatatcTGTTTTACCCTGCTTTTCCCGGCCCTGTCTAGATGGGATACAGATTTTGTCGAATTGACGTACATatttttgcattttagctaaccccaACTATTTTCATAACCTTAATCTAATGACCCTAACGTGCTACTCTAATTATCataacctgctgcgtaaattcCCCTAAACTCTACTACGAAAATTAAATTTGGACATAAACTGTATCCCTTCTAGACATAACCGATTTTACCCGACCCTCACAGATAATTCTGAAAAGCGtccatgtagctagctacagacaGGTCACGAGTCTGATCATCATCTTCTGAAAATTGGATCCAATGGATCAATATGTGAGATATGGAAATATTGGTCAGTCAGAAGAGCTTTTTGATCAATCATTGCATTggagtgaggttaaagaggaggCTGAAGAATGTCAGATTTCAGCTGTGCCATTAGGAGTTGAAACATCACAGGTTTTTAAAAAAGAGGACACTGATGGACAAGATCCTTCCTTTGAAACAGTTTCAGACGTCCATGGAGTCGCAGAGCAAGAGCGTGGACCTAAAGGCAAGGTGCTGCCTTCACCAGCCCCAGTCAAAGAGGAGTCTGAAGAATGCTCCCTTCTGccagtagatgaagaggaggttACCTTAATTACAGTGAAGGAAGAAGAGAATGAAGAtgagttgaagtcagaagatgAGAACATTGTGAAAGTGTCAGTGCCTTGGGAGCCGTTGGAAACATCACCATCATACTCGGATACAGATGATACAGAGGACAGTGAGATGGAAGGTGATAATGTGCGGGACTGTGAAAACGATGAGCATGACGTTTCAGTAGGATTGAAGATTGAAGATTGCAGCAGGACATCATTGGATCAAGGGACTGCACCAGGTGACTCTAAAGGTGTGTCCTCCTTCTATCCATGCCCCCAATGTGCGCTCGGCTTCACCATAGAGCGCTTTTTCCATGGGCACCTCAAGAGGGACCACCCCAAAGAGTACATCGCAATGTTGAAGTCTGGGAAAATCatagcaaaaaaagaaaacagtGTACAGCTGACCCCAGCCACATGCCCGCAATGTGGCAAAAGCTTCTACAATAAATATGTAATGCAAACACACAGAAGgactcacacaggggagaaaccctatcATTGTGTAGACTGTGGGAAGAGCTATGTCTGCGCTGAATCACTTAAAACACACAGAAGGACTCACACTGGGGAGAGACCATATAAATGCTTTGAGTGTGGGAAAGGATTTGGAGAACGATCCCAACGGATTAGACATGAAATGATCCACACAGGAAGACCATATAAATGCTCTCAATGTGACAAATGTTTTTGCTTTTCCAGAGATTTTAAGAGACATCAGTTGACACATAAGAAGACCCACACTGGACATAGACCCTATAATGTCCACAGGTGTAAGAAGTCCTCTGGCCAGCTAGAAGCTCTCAAAGCACACCAGAAAACACACAAAGGAAAAAATACTTTTCAGTGCTCTGTGTGACAATTGTTTTGGATTTTTCAGAGACCATACCATACATCAGTTGACACGAACAGGGGAGAAATCGTTCACACAGCACCtaatgtcctataaacaccagcCTGAGAGGCTTGAAGGAAGTCACAATATCATCTGCTACAGAATCGCAAAGTGTCACAGATGTGTGCCCTCGACTCAGTCTGGTGTCAAACTTTAACCATAACATTCAACACTGGCAGACATTTGATATTGTTAGTTAAATAGGTCAAAAGTATGAACATCTTTACTTAGTTCCAACAGATAATTGTAGACTAATAAGGGAAATGTCTTCCCACACATATAATCATGCTAATTACATGCCAATTAATATAATCAGTAAATCAAATACTGGAAAATAATTGATAAATTCATTTTCCCTTTACAGTCCCCCTTTGGTCAAACAGACATAAACATATGTCGCGCCCTATGACCACAGATGCCTTAATGCATATAGATTACTACAATCAATCTGCcatttaaacaacaacaacattgtttGCAACCAACCAGACAAGCTTTCACCACCATCACCTGCTGCACATTCTGCCTCATCAGATTCTCCCACACACCAGTAGCATGATAGAAGTTTCGATAAGATCTCCCCATGCCTGCTCCATGTGCTTAGTCTCAGGACACATGCATCGATAGCTCAGATGCTGTACACAGGTTGCTTCGCTCAGCCTAGTAGTTGAGAGACAGGGCAGTTGTGGATGCTGTTTTTCAGCTGGTTAGAGAGGCTGGGGTCTTGCACTGATCTGGTCAAATTAATCGGATGCATATAGGTACCCTCTGGGGGCTGAATGGCCATCACCTCGAGGAAATTATAAGATTAATTAGGCCATTACAAATACATATTACCACAAGTACATTCTTGACACAATCATTTTTAACAAGACACACATGATTAGTCATCAACACGTGTCTCTGTTCTTGATTAAACACAGGCATAGTTATACTCTTGTCTCACAACAAAATTATCTACCATTCCCACTGGAACTGTCAGATCCCCCATTGATTTTATTTTTTCCCCCTGGTTTTGAATGAGGTTAAACCCCTTTTCATTAGATATGTAGATATGgttctgtgtggctcagttggtagagcatggcgcttgcaaagccagggttgtgggtttgtttCACACTGGGGACCGCTACgaaaaaatatgaaaatgtatgtactcAGCACTGTACGTCACTCTGGATAAGCGCATCTGCTAGATGACTAAAATGtgaatgtaaatgtaatatcaTATTTGTATATCTCCTTCAGGATAAACAAATACAGCATATATTACATTTTAAGTACACAGTGCTGAGCTGTCtgtttatttaaattttattttaccaggcaggtcaattaagaacaaattcttatttataatgatagCCTTTTTACCAAACAAAAAGTCATATTAGTTATAATTTCTATTTAATTTGTCCACCTAAAAGTAAAACATTCCATACTCCGGGATTATCCAATAAGTGTCTCAAATTACACATACTCCTATTTTCATTTACTCTAACCTGGAGCCCCAAGTGTGGCTCccaacaggtttttaaaaatgaaACACTTTTGTTCACAGGGAGGACACAGCACCCTTTACTTTCTCATTATTGGAAGGAATAGTTTGTATTTTAGTCTTAAGTTTTACTGTAGAATTACCAATCTCTGTTGGATATTCTTTATTTGCTATATTATAAATGGgcttcacatacttttttttttctaaaaaaaaaGACAAGAGTATTTATTGTCCTGTCAGAGAAATTTCACATATCAACACGGCTGCCTTCTCAGCCTAATCTTATATTTTGACCAAAAGCTCCAGCCATTCGCACGGCTGGCCCTTCACATACCACCATCTTTCTCCACGTTTTTGTAACTTTGTTCTACTATGACAAAAGAAGCAGACATCTAACAGGGGATGGTGAAAGGCAAGTCACAAATATAGAACCATAGTTCCAAAAGTAGACCAGTGGcaacccatcattcagggcatGTGGGGTAGAGCCTACCTGTTTAGCAAAAAAAtacgaatatatatatatattttttgttgttgacggttttgcatgttattttggcattaatacgtgtcacatatcagttcgCAAACAATGTAAAAGAACAACATtaagttaataaagccgcata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2535027 lncRNA downstream 48858 25228727 ~ 25228931 (-) True G2216268
TU2535024 lncRNA downstream 50024 25227545 ~ 25227765 (-) True G2216265
TU2535007 lncRNA downstream 57333 25220251 ~ 25220456 (-) True G2216248
TU2534997 lncRNA downstream 63207 25214252 ~ 25214582 (-) True G2216238
TU2534994 lncRNA downstream 65046 25212527 ~ 25212743 (-) True G2216235
TU2535505 lncRNA upstream 56570 25350871 ~ 25354840 (-) True G2216699
TU2535498 lncRNA upstream 67616 25361917 ~ 25382798 (-) False G2216696
TU2535497 lncRNA upstream 86575 25380876 ~ 25382798 (-) True G2216696
TU2535654 lncRNA upstream 296436 25590737 ~ 25591194 (-) True G2216823
TU2535633 lncRNA upstream 298233 25592534 ~ 25593592 (-) True G2216807
XM_021599266.2 mRNA downstream 3617 25270817 ~ 25274172 (-) False LOC110521598
XM_036969311.1 mRNA downstream 3617 25270817 ~ 25274172 (-) True LOC110521598
XM_021599257.2 mRNA downstream 75786 25146039 ~ 25202003 (-) False LOC110521594
NM_001160576.1 mRNA upstream 2042 25296343 ~ 25297315 (-) True dad1
XM_021599271.2 mRNA upstream 8653 25302954 ~ 25322133 (-) True LOC110521601
XM_021599272.2 mRNA upstream 43499 25337800 ~ 25345020 (-) True rabggta
XM_036968477.1 mRNA upstream 97725 25392026 ~ 25400868 (-) False LOC110521604
XM_021599276.2 mRNA upstream 97725 25392026 ~ 25407156 (-) False LOC110521604
TU2532260 other downstream 2078383 23197647 ~ 23199406 (-) False G2213647
TU2532275 other downstream 2098178 23178506 ~ 23179611 (-) True G2213654
TU2532098 other downstream 2276541 22986359 ~ 23001248 (-) True LOC110521564
TU2531474 other downstream 3367053 21907963 ~ 21910736 (-) True G2212908
TU2531311 other downstream 3611174 21665964 ~ 21666615 (-) True G2212755
TU2536522 other upstream 623053 25917354 ~ 25920245 (-) False G2217605
TU2536525 other upstream 623053 25917354 ~ 25919877 (-) True G2217605
TU2536746 other upstream 942384 26236685 ~ 26237398 (-) True G2217805
TU2536765 other upstream 974045 26268346 ~ 26341495 (-) True G2217824
TU2537095 other upstream 1594588 26888889 ~ 26890611 (-) True G2218118

Expression Profile