RNA id: TU2535505


Basic Information

Item Value
RNA id TU2535505
length 1750
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G2216699
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 25350871 ~ 25354840 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaaagcgaaaacaggtttttacaaatgtattaaatataaaaaacataaataccctaatttgcataagtattccgaccgtttgctatgagacttgaaattgagctcaggtgcaccctgtttccattgatcatccttgagatgtttctacaacttgattggtccacctggggtaaattaaattgattggacatgatttggaaaggcacgcacctgtctgtataaggtcccacagttgacagtgcatgaggtcgaaggaattgttcttGGAGCaccgagacagggttgtgtcgagacacagatctggggaaggctaccaaaaaaattctgcagcatagAAGGTCCCCCAAAACACAGTGggctccatcattcctaaatggaagaagttttgaaccaccaagactcttcctagagctggccgcccagccaaactgagcaatcgggggagaagggccttggtcagggaggtgaccaagaacccgatggtcactctgacagagctccagagttcctctgtggaaatgagagaaccttccagaaggacaaccatctctgcagcactccacgaatcaggcctttatggtagagtggccagacggaagtcacggaagacacatgacagctcgcttggtatttgccaaaaggcacctaaagaactttcagaccatgagaaacaagattctctggtctgatgaaaccaagattgaactctttggcctgaatgtcaagtgtcacatctggaggaaacctggcaccatccctacggtgaagcatggtggtggcagcattgactgtggggatgtttttcagcggcagttactgggagactagtcaggatcgagggaaagatgaacggagcaaagtacagagagatccttgatgaaaacctgctccagagcaggttcaccttccaacaggacatagaccctaagcacacagtcatgaAAACACAGGAGTCATTCccgaagaagactcaaggctgtaatcactgccaaaatttcttcaacaaagtactgagtgaagggtctgaatacttGTAACCAACACACAGGGTCCAAACCCAGGTCTCTTGCGCACCATTAAAGCATAGGCCTGCTTTATTGGCAGGGTATGTGTGCTTTAGCCAGTCTGATAGTACCACTAACCATTATTGAAGTTACAGCTAATCAGCTCCTGGGATCTACTAGAAAAGCACCTAATGATGTTCACCCGTACTCCAGATATAAGCGTGATACACCTTGGTCTGAGGAAACAGATAATATACATTTCAACCTACTAGGTGTGCCAGTAGGTGTTCCTTAGGAATTCTAGGCCCTAAACAGGAATGATGGTTTATGGCATCTACTACCAATTCTTGGCTCCGCTATTGTGGATGCCAAACAGACCTCATGGATAAACTAAATATACTATAATCAACAATGTTTTGTTAACTATACCCGCTCTGCCCTTACTGGTATGGCCAAGCAATTGGAGGCTACTACCAGGACCGCCAGGCAGAATAGATTGACTTTAGATATGATCCTGGCCAGTCAGGGAGGGGTTTGCAAAATGTTTGGTGAACAATGTTGTACATTTATACCTAATAATACCAGTCCTGATGGGAGTATATCAAAAGCATTGGTTGGATTGGACGAGCTTTCGGCAGAAATGAAGGGCGTGGCTGGGGTGGAGGAGTCTGGCTGGATGTCTTGGATGGGGGTGTGGCTTGGTGAGTATGCATCACTGGTGGTTATTGGATTTCTGACCCTAAtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2535457 lncRNA downstream 71596 25277792 ~ 25279275 (-) True LOC110521599
TU2535027 lncRNA downstream 121940 25228727 ~ 25228931 (-) True G2216268
TU2535024 lncRNA downstream 123106 25227545 ~ 25227765 (-) True G2216265
TU2535007 lncRNA downstream 130415 25220251 ~ 25220456 (-) True G2216248
TU2534997 lncRNA downstream 136289 25214252 ~ 25214582 (-) True G2216238
TU2535498 lncRNA upstream 7077 25361917 ~ 25382798 (-) False G2216696
TU2535497 lncRNA upstream 26036 25380876 ~ 25382798 (-) True G2216696
TU2535654 lncRNA upstream 235897 25590737 ~ 25591194 (-) True G2216823
TU2535633 lncRNA upstream 237694 25592534 ~ 25593592 (-) True G2216807
TU2535706 lncRNA upstream 314065 25668905 ~ 25686040 (-) True G2216871
XM_021599272.2 mRNA downstream 5851 25337800 ~ 25345020 (-) True rabggta
XM_021599271.2 mRNA downstream 28738 25302954 ~ 25322133 (-) True LOC110521601
NM_001160576.1 mRNA downstream 53556 25296343 ~ 25297315 (-) True dad1
XM_021599267.2 mRNA downstream 56570 25277789 ~ 25294301 (-) False LOC110521599
XM_021599269.2 mRNA downstream 56570 25277789 ~ 25294301 (-) False LOC110521599
XM_036968477.1 mRNA upstream 37186 25392026 ~ 25400868 (-) False LOC110521604
XM_021599276.2 mRNA upstream 37186 25392026 ~ 25407156 (-) False LOC110521604
XM_021599274.2 mRNA upstream 37186 25392026 ~ 25407160 (-) True LOC110521604
XM_036968621.1 mRNA upstream 74248 25429088 ~ 25481913 (-) False LOC110521606
XM_036968622.1 mRNA upstream 74248 25429088 ~ 25483256 (-) False LOC110521606
TU2532260 other downstream 2151465 23197647 ~ 23199406 (-) False G2213647
TU2532275 other downstream 2171260 23178506 ~ 23179611 (-) True G2213654
TU2532098 other downstream 2349623 22986359 ~ 23001248 (-) True LOC110521564
TU2531474 other downstream 3440135 21907963 ~ 21910736 (-) True G2212908
TU2531311 other downstream 3684256 21665964 ~ 21666615 (-) True G2212755
TU2536522 other upstream 562514 25917354 ~ 25920245 (-) False G2217605
TU2536525 other upstream 562514 25917354 ~ 25919877 (-) True G2217605
TU2536746 other upstream 881845 26236685 ~ 26237398 (-) True G2217805
TU2536765 other upstream 913506 26268346 ~ 26341495 (-) True G2217824
TU2537095 other upstream 1534049 26888889 ~ 26890611 (-) True G2218118

Expression Profile