RNA id: TU2535498



Basic Information


Item Value
RNA id TU2535498
length 1135
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G2216696
representative False

Chromosome Information


Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 25361917 ~ 25382798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTCACCTTTGCATATCTTTATTTGATACAAAGTACACAGTTGTATGACAGGGAAATCAATATTCTGTTCAAAAGTGTAAAAAATGTAAAGTAAAAGAAACACCAAGAACATTATGTTAGAATCTATAATTGGACCTGGAAAATGTGTAATTTCGGTAAATCTGAGTTAGTAAATTGCTATTAGTTCAGTATTGAGTGCTCTGTAAATTGCAGTTACCTGTAGTTGAATCTATAAAATACACAGTAATGATATCCTGTAGTCTACTTCTCCCTGTCCAGTGTATCCAAACCTTACATTCTAGTGCTCACATGCTTTCTCACTGGAGCCTGGCCTGGTCAGaagtggtgcactatgtagggaatagtgtgccactCACTCACCAATGCCTTTGAAGGTGACATGAAACAGAGGGACAATGGGCCGGTCATAGAAACTGTCCAGTTGGTTGACCAGAGCTTCCTTCACCATCTTATACCCTGAGATAAACACTACCCTGTCACTGCCTCGACGCAGGCTGAACACTGGACCATAGTCCTCAGCCATCTACAGGGAAGGAAGGAATGGTTGTGAcacatttattacatttttataaaatatttaacctttatttagagAATCCCAATTGAGACCACAGTTATTTTTCAATGGTGCCCTGTGTAAAACACGCCACATGCAAGTCAAATCTGTGTCAATTATTTCACTGCACTAGTAAAGATATAGTATTGGTAACATAAGTCATTAGTAATCAAATATTTCTGATTAAAATGAGCAATGATTATATGAGTATTTTTCTGACCTTGTCAATGGTCTTGAAGTCGAGCCCTGTGAAGATATTACCCAGGAAAGGAACAGACCAGGGTCCAGGGGGGAAGTTAGTTGGAGTTCTGTTTCTGACAATGTCCACCACCAAGAGAAACACAAAGATAAACACCAGCCAGCCCTTCACATCGAAACAGTCCAATACCGCCAGCAGAATCATGGTGAGAACAGCTGTTTTTGCAGACTCTAAGACAGGTTGAAATGCTCTCTGTGATATTCTCTCTCGgtagcctctctctttctctccgtttctgtctttctctctctgaagccctcctctttctctctctttctcttagcaGCCTCTCCACTACCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2535505 lncRNA downstream 7077 25350871 ~ 25354840 (-) True G2216699
TU2535457 lncRNA downstream 82642 25277792 ~ 25279275 (-) True LOC110521599
TU2535027 lncRNA downstream 132986 25228727 ~ 25228931 (-) True G2216268
TU2535024 lncRNA downstream 134152 25227545 ~ 25227765 (-) True G2216265
TU2535007 lncRNA downstream 141461 25220251 ~ 25220456 (-) True G2216248
TU2535654 lncRNA upstream 207939 25590737 ~ 25591194 (-) True G2216823
TU2535633 lncRNA upstream 209736 25592534 ~ 25593592 (-) True G2216807
TU2535706 lncRNA upstream 286107 25668905 ~ 25686040 (-) True G2216871
TU2535824 lncRNA upstream 436457 25819255 ~ 25857045 (-) False G2216976
TU2535828 lncRNA upstream 436457 25819255 ~ 25857045 (-) False G2216976
XM_021599272.2 mRNA downstream 16897 25337800 ~ 25345020 (-) True rabggta
XM_021599271.2 mRNA downstream 39784 25302954 ~ 25322133 (-) True LOC110521601
NM_001160576.1 mRNA downstream 64602 25296343 ~ 25297315 (-) True dad1
XM_021599270.2 mRNA downstream 67616 25277789 ~ 25294301 (-) False LOC110521599
XM_036968477.1 mRNA upstream 9228 25392026 ~ 25400868 (-) False LOC110521604
XM_021599276.2 mRNA upstream 9228 25392026 ~ 25407156 (-) False LOC110521604
XM_021599274.2 mRNA upstream 9228 25392026 ~ 25407160 (-) True LOC110521604
XM_036968621.1 mRNA upstream 46290 25429088 ~ 25481913 (-) False LOC110521606
XM_036968622.1 mRNA upstream 46290 25429088 ~ 25483256 (-) False LOC110521606
TU2532260 other downstream 2162511 23197647 ~ 23199406 (-) False G2213647
TU2532275 other downstream 2182306 23178506 ~ 23179611 (-) True G2213654
TU2532098 other downstream 2360669 22986359 ~ 23001248 (-) True LOC110521564
TU2531474 other downstream 3451181 21907963 ~ 21910736 (-) True G2212908
TU2531311 other downstream 3695302 21665964 ~ 21666615 (-) True G2212755
TU2536522 other upstream 534556 25917354 ~ 25920245 (-) False G2217605
TU2536525 other upstream 534556 25917354 ~ 25919877 (-) True G2217605
TU2536746 other upstream 853887 26236685 ~ 26237398 (-) True G2217805
TU2536765 other upstream 885548 26268346 ~ 26341495 (-) True G2217824
TU2537095 other upstream 1506091 26888889 ~ 26890611 (-) True G2218118

Expression Profile