RNA id: XM_021599331.2


Basic Information

Item Value
RNA id XM_021599331.2
length 1013
RNA type mRNA
GC content 0.54
exon number 8
gene id LOC110521643
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27249905 ~ 27252746 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCTGGTCACAGTGTCTGGAGCTGAGCCTGACAGTGACAAACAGACAGGACTATAAGAGCTCACTGCTGTGGGTCAGCGCTCCACATTACTGACAGACTGCCACCATGCTGGAGAGACTGGTATTCCTGCTGCTGCTGGCAGCCTACGCATATGGTTGTGGTACTCCCACCTTCGAGCCCAACACCAACAGGATTGTGAATGGAGAGGATGCCCGCGCCCATAGCTGGCCATGGCAGATTTCAATGCAGGTGAAGCATGGCAGCCGTTGGCATCACACCTGTGGGGGCACTCTGATTGGCTCTCGCTGGGTCCTGACTGCTGGACACTGCGTATGGCCTGGAGATGTGTACCGCGTGGTGATGGGAGAGCATGACCAGAgtgtacaggagggaactgagcagATCAGAGACGTGCTGCGTATCCTGGTTCATCCCGACTGGGACATCAACATGGTCGCCGCTGGAAATGATCTTGCCCTGCTGAAACTGGACAAGGCTCCCATCATGAATGAGAACGTTGGTCTGGCTTGCCTTCCTGAGGCAGGAGAGATCCCTGCTCATGGAGACGCATGCTTCATCTCTGGCTGGGGAAACCTCTACACCCATGGTCCCATGCCTGATAAGCTGCAGCAGGCTCTTCTGCCCGTGGTGGGGAACAGTGTGTGTAGGCAGAGTGACTGGTGGGGAATGGTGGTGAAGGACACCATGATCTGTGCTGGAGGGGGTGAAGTGTCAGGATGCAACGGGGACTCTGGAGGTCCTCTAAACTGTAAGGGTGCTGATGGTAAGTGGTACGTACAGGGCGTGACCAGCTTTGTGTCCTCTCGTGTCTGCAACGAGGTGAAGAAACCAACCGTCTTCACCCGCATCTCAGCCTTTACTGACTGGCTCAGCAATacAATGCTTTACTATTAAGGATCCTACTGTATCTCGGAGGCTGGCAGATGACCATCTTGTAATAACGCCATGAATACATTTTGCCCAATAAATCATATGCCCATGGTTCAGATTC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2537535 lncRNA downstream 280 27249352 ~ 27249625 (-) True G2218517
TU2537485 lncRNA downstream 47093 27202610 ~ 27202812 (-) True G2218467
TU2537481 lncRNA downstream 51360 27198322 ~ 27198545 (-) True LOC110522773
TU2537438 lncRNA downstream 125111 27124465 ~ 27124794 (-) True G2218428
TU2537430 lncRNA downstream 127244 27121035 ~ 27122661 (-) True G2218421
TU2537542 lncRNA upstream 4169 27256915 ~ 27257171 (-) True G2218524
TU2537637 lncRNA upstream 74358 27327104 ~ 27327313 (-) True G2218619
TU2537736 lncRNA upstream 104941 27357687 ~ 27420282 (-) True LOC110521644
TU2538451 lncRNA upstream 190517 27443263 ~ 27443644 (-) True G2219346
TU2538538 lncRNA upstream 273361 27526107 ~ 27530675 (-) True G2219420
XM_036969314.1 mRNA downstream 14560 27225499 ~ 27235345 (-) False LOC100136211
XM_021599329.2 mRNA downstream 14560 27227320 ~ 27235345 (-) True LOC100136211
LOC110522773 mRNA downstream 47783 27198441 ~ 27202122 (-) False LOC110522773
XM_021599328.2 mRNA downstream 53025 27186564 ~ 27196880 (-) True LOC110521641
XM_021599327.2 mRNA downstream 69090 27157549 ~ 27180815 (-) False LOC110521640
XM_021599332.2 mRNA upstream 103517 27356263 ~ 27427670 (-) False LOC110521644
XM_036969080.1 mRNA upstream 103517 27356263 ~ 27427670 (-) False LOC110521644
XM_021599333.2 mRNA upstream 193299 27446045 ~ 27457093 (-) False LOC110521645
XM_021599336.2 mRNA upstream 193299 27446045 ~ 27457563 (-) True LOC110521645
XM_021599341.2 mRNA upstream 291406 27544152 ~ 27559964 (-) True LOC110521648
TU2537466 other downstream 69517 27173253 ~ 27180388 (-) True LOC110521640
TU2537095 other downstream 359294 26888889 ~ 26890611 (-) True G2218118
TU2536765 other downstream 908410 26268346 ~ 26341495 (-) True G2217824
TU2536746 other downstream 1012507 26236685 ~ 26237398 (-) True G2217805
TU2536525 other downstream 1330028 25917354 ~ 25919877 (-) True G2217605
TU2538742 other upstream 592128 27844874 ~ 27845401 (-) True G2219594
TU2538750 other upstream 610658 27863404 ~ 27864068 (-) True G2219602
TU2538944 other upstream 1120550 28373296 ~ 28382275 (-) True lnx1
TU2540472 other upstream 2215897 29468643 ~ 29473675 (-) True G2221180
TU2542873 other upstream 4021974 31274720 ~ 31275143 (-) True G2223487

Expression Profile