RNA id: XM_036968751.1


Basic Information

Item Value
RNA id XM_036968751.1
length 3622
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110521697
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 29893802 ~ 29992077 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACATTTTAATAGTGCTAGAGAGCAAGCAAGCGAATATCACTCAGATGCATGCCACTACACTGACGGGAGTGTAAGAAAGCATTGCACTGACTCGAGTGCACAGTGCTCCAAGTGAGTCTCTCCAAtcaaatttaaaaacaaatagAAAAGAAGATAATTTGGCTTTTTTTGACGAGGAGGGGAAAACAACCAGCTATTATTGCATGCATGCGTTGTTTATTCTATGGAACATCATAAATAACCTATTTTCACCCTGGAAAAACACAAGATTCACCTGCAGAAGGTGACATTTGTTTTCCCTCGTTGGAACGAGCGACGCGCGCTTGTTCGACTGTCCGGTGCGCTGTGTTGCCTTCTCCTTCCTTTGGATTTTACACCATCGAGGGTACCCACTGATTCGGTGAGAGAGGGATCCAGCCATTCAGGGAGACATTGTAACAACTTCAGTGATCAGCTTAGTACAACACAGCTTGCAGAATCAGGACACTGGGAGAGAAGTTTGGGGAGAATGAAGAGTCGTCGGGTGCGGGGGAAGCATGAGTGGCCGGTGTATCACTGTTAGACGGGCGGCTCTGATGGTTCTATGGGAGTGTACAACTCTAAACCTCCTCCAGTGCTGGGTGGTAGTGGCGGCGGCCGCGGGGGCCAGCCGTACTGGAGTTGGGGCCGCTGCAGATGCAGGGGGCTCCAGCAATGCCACGGGGCCCTTTGCCTGGCTCCTGTCTGACAAAGGGCCCTTTCATCACTCCCAGGAGTTTTCTGACTTTACAGAGCGCTACCAGCAAGGATTCACCACCAAGTACACGATATACAGGGAGTTTGGCCGCTGGAAGGTGAACAGCCTGGCTCTAGAGAGACAGGATAACAATGGTCTGGCTCTGCCTCTGGACCCCGAGTTCCTTCAGACCATAAGGCACCTGGGCAGACGGCCCAGCCTCAGCTCTATCACAGACAGCATCATCAGGAAGTTCGGAACACACTTTCTACTCTCAGCCACCCTGGGGGGGGAGGAGTCGTTAATGATCTTTGTGGACAAGCGGAGGTTGAGTAGGACAGTGGAGGCAAGCGAGGCCAACGGTACGGCCGTGACTCTGGAGGCACTCCACCAGCTGGCTGCATCCTACTTCATCGACAGGGAAGGCACCTTGCGCAAGCTACACCACATCCAAATAGCATCCACAGCCATCAAGgTGACCGAAACAAGGACAGGCCCTCTTGGATGCAGTAACTATGACAACCTGGACTCAGTCAGCTCTGTTCTGGTTCAGAGCCCTGAAAACAAGATTAATCTGCAAGGTCTCCAGACCATCCTACCAGAGTACCTGAGGGCTAGGTTTGTCCAGGCGGCTCTGAACTACATTGGCTGTAATGAGGAGGGTCAGTTTGTGTGCCGGGACAATGACTGTTGGTGCCGCTGCAGCCCAGGCTTCCCCCAGTGTAACTGCCCCAACGTGGACCTGAGGGCCATGGAGGCCAGCCTAATGCACATCAGGGACACCTGGAACATAGCCAACCAGGACTTTGAGGAGTCAGAGGAGTTCCAGAACTTTGTACGGAGACTACCGACATTCTACGCCCTCAACACATCTGCCATCCAGTACTTCTGGAAAATGGAGCCTGCCGTCCATCAGCGCTACAGACAGCTAGATCTCAGCAGCAGACAGCTTATCGCCAAATCCAGACGGATCGTTGACAAACTCTTCACCCTCAGCAAGAGGTGTCGGACACAGCTGACAGTCGTTGTgctgagaaagagGTCCTTCAGCTACTGGCTGAACTACATCCTGTCCATCATGTACTGCAGTGAGAACAACTACATAGGTTCCTACCTGGAGGAGACAAGGAGCTGCTCTTGCCCCTACGACCATCCGTCCTGCCAGGGTGTCATCCCTTGCACTGTGGGCGATGCCTCTTTCTGCGCCTCTTGCTCCTATGACAACCGCTCCCGCTGTGCCAGCTGCAACCCCGGGTACATGCTCAGCCAGGGGGTCTGCCGCAATGAGGTCCCAGACTCCACGGACCACTACATCAGCTTCGAGACAGACCTGCAGGACCTGGAGCTGAGATACCTGCTGCAGAAGAAAGACAGCCGTATTAGCATCCATGGGATCTTCGTCAGCAACGACGTCCGACTCAACAACTGGTTTGACCCATCGTGGAGGAAGAGGATGCTGTTGACATTGAAGAGCAACAAGTACAAGTCCAACCACGTCCACATGCTCCTGGGGATGACCCTGCAGATCTGCCTAACTAGGAACAGCTCCCTGGAACCAGTGCTGTCTGTCTACATCAACCCCTTCGGGGGAAGTCACTCTGAGAGCTGGAGCATGCCCATAGACCAGAACAGCTATCCTGATTGGGAGAGGACTAAACTAAACATTCCCCTGGACTGTTACAACTGGACATTGACTTTGGGTAACAAGTGGAAAACGTTTTTTGAGACTGTCCACTTCTACCTGCGGAGCAGGATCAGGGCTCCATTGCCCCAAGGGAACGGCTCGGTGTACTACGAACCTTTCGAGTTTCTGGAGCCCGGTAAGAACCTGGGctacatgaaaataaatagcatCCAGGTGTTCGGCTATAGTATGCATTTTGACCCAGAAGCGATCCAGGACCTGATTCTGCAGCTGGACTACCCGTACACTCAGGGATCGCAGGACTCAGCCCTGCTGCAGCTGCTGGAGATCAGGGACCGGGTCAACAGACTGTCCCCTCCCGGACCTCAGCTCCTGGACCTGTTCTCCTGTCTCCTGCGCCACCGCCTCAAATTATCCACCACAGATGTTGTCCGAATACAGGCAGCGTTGCAGGCTTTCTCTGCCAAACAGCCTAATTCCATGGAATACGAAACAACCAAATTATGTAGCTAATAAGGTGCCAGTGTCCAGATATGCAGATGCTTGTGCTGctatcacactgacctgattacaGTTAAGAGCAGTTTTGGAAGGCACTGAGGGACATTTTGGTTATGATCTCAAGAGATATGCATTTGGATTAATGTAAAATTATAACTTTCTGGAAATGTGTTGTGTCATAGACACATATAACAGGGGGCTTCATCATGTTCACTTTGCCTTTTTACATAATAACAATAAAACTCAGACTTTCTGACCATTATCGATATCAAAAGATGTATCATCACTGATATGTTGCCCATGTCCTGACATCCTTAAATTGCACAGATCTCAATCACTTACAATGTGATGCTTTTGCTGATAATGAAGTGTTATCTCGACAGTGTGTTTGGTTTGACACCAGCATGGCTTTAGGTCCTTCACTTTGTTATTAAACACAACCCATGTTTTTATACTCACACTCTTCAGTTTAATCCTACCCCACCCCATGTTCAGAGCTTCATGAGTTAATATGGAAATCAACTGTTccttgtttaactttttttttcatATGTTTAAATTCCCACAAATTGGAGTTACAGTACTTCAGACGTACAGAAATAAAACACCACAAATGCAGTGGCTAGTATGTTATGTTACATGTCATTTAATTTTTTATACTGCAGTTGTTTGTGAACAGTTACTAAGCAATGTCCATATGCTGTATAACATTCTGAATTTGTTCATTCACTAAATAAAAGTCATTTTTATGTCCTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2540862 lncRNA downstream 58580 29834957 ~ 29835222 (-) True G2221553
TU2540861 lncRNA downstream 59074 29834392 ~ 29834728 (-) True G2221552
TU2540847 lncRNA downstream 68487 29820088 ~ 29825315 (-) True G2221538
TU2540836 lncRNA downstream 75529 29817958 ~ 29818273 (-) True G2221528
TU2540805 lncRNA downstream 98632 29794932 ~ 29795170 (-) True G2221497
TU2541188 lncRNA upstream 78803 30070880 ~ 30071232 (-) True G2221860
TU2541481 lncRNA upstream 189710 30181787 ~ 30190913 (-) True G2222144
TU2541591 lncRNA upstream 361423 30353500 ~ 30353716 (-) True G2222248
TU2541592 lncRNA upstream 362060 30354137 ~ 30354340 (-) True G2222249
TU2541595 lncRNA upstream 367096 30359173 ~ 30359483 (-) True G2222252
XM_021599476.2 mRNA downstream 156397 29710512 ~ 29737405 (-) True LOC110521696
XM_021599475.2 mRNA downstream 160350 29710512 ~ 29733452 (-) False LOC110521696
XM_021599474.2 mRNA downstream 220963 29670113 ~ 29672839 (-) True LOC110521695
XM_021599472.2 mRNA downstream 242408 29634764 ~ 29651394 (-) True LOC110521694
XR_005040855.1 mRNA downstream 337665 29538941 ~ 29556137 (-) False LOC110521692
XM_021599482.2 mRNA upstream 476542 30468619 ~ 30537355 (-) True LOC110521699
XM_036968782.1 mRNA upstream 894551 30886628 ~ 30900293 (-) False uchl5
XM_021599491.2 mRNA upstream 894551 30886628 ~ 30900741 (-) False uchl5
XM_036968781.1 mRNA upstream 894551 30886628 ~ 30901608 (-) False uchl5
XM_021599490.2 mRNA upstream 894551 30886628 ~ 30901651 (-) False uchl5
TU2540472 other downstream 420127 29468643 ~ 29473675 (-) True G2221180
TU2538944 other downstream 1511527 28373296 ~ 28382275 (-) True lnx1
TU2538750 other downstream 2029734 27863404 ~ 27864068 (-) True G2219602
TU2538742 other downstream 2048401 27844874 ~ 27845401 (-) True G2219594
TU2537466 other downstream 2713414 27173253 ~ 27180388 (-) True LOC110521640
TU2542873 other upstream 1282643 31274720 ~ 31275143 (-) True G2223487
TU2544510 other upstream 2429655 32421732 ~ 32422047 (-) True G2224948
TU2546157 other upstream 3637045 33629122 ~ 33629894 (-) True G2226519
TU2546202 other upstream 3707803 33699880 ~ 33702443 (-) True LOC110521741
TU2546396 other upstream 3817302 33809379 ~ 33809894 (-) True G2226745

Expression Profile