RNA id: TCONS_00006087


Basic Information

Item Value
RNA id TCONS_00006087
length 545
lncRNA type sense_over
GC content 0.52
exon number 5
gene id XLOC_002903
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34737322 ~ 34871737 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGTTTCAACATGCTGCAATACGAAGTGAATGGGACCCCAGCGAGTCAGCTGTCCACACCCCATTCTCCAAAGTCACCTAGTCCATCTCCAGCCAGCCCGGGGAGCTTAAAGAAACGCAGGGGGTCTCAGCACAGCGGCTCCTCTCTGTCTCTGTCCTCCACCAAAGTCTGCAGTATGGATGAGGAGGAAGGGCCTGTCAGCGATGCCGAGACGTTGGAGGAAACGCCAATTCCCACCGTCCCGAGCTCCATTTCAGATCGGTACAAAGTGGGCCGGATGATCGGAGACGGGAACTTTGCGGTGGTTCACGAGTGTGTGGAGCACTCGACCGACAGGGCGTACGCTCTGAAGATCATCAACAAAGGCAAATGCAGAGGAAAGGAGCATATGATCCAGAACGAAGTGGCTATCCTGAGAAGAGTGAAGCATCCGAACATTGTGTTGCTGATCGAGGAAATGGACACTTATAATGAACTCTATCTGGTCATGGAGCTGGTTAAGGTTAGTGGTGGTGAAAGTTTGTGGAAACTGGTTTCATGCGTT

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006086 lncRNA downstream 553744 34196782 ~ 34198566 (-) True XLOC_002900
TCONS_00005339 lncRNA downstream 871946 33876131 ~ 33880364 (-) True XLOC_002891
TCONS_00006085 lncRNA downstream 1087521 33663165 ~ 33664789 (-) True XLOC_002890
TCONS_00005338 lncRNA downstream 1133368 33617624 ~ 33618942 (-) True XLOC_002889
TCONS_00006084 lncRNA downstream 1587737 33158589 ~ 33164573 (-) True XLOC_002877
TCONS_00006089 lncRNA upstream 98134 34870289 ~ 34871737 (-) True XLOC_002903
TCONS_00005367 lncRNA upstream 108493 34880648 ~ 34889020 (-) True XLOC_002904
TCONS_00005372 lncRNA upstream 178905 34951060 ~ 34959178 (-) False XLOC_002906
TCONS_00005373 lncRNA upstream 179076 34951231 ~ 34958024 (-) True XLOC_002906
TCONS_00005377 lncRNA upstream 193609 34965764 ~ 34969903 (-) False XLOC_002907
TCONS_00005359 mRNA downstream 10572 34737322 ~ 34741738 (-) False XLOC_002903
TCONS_00005356 mRNA downstream 509041 34220492 ~ 34243269 (-) False XLOC_002901
TCONS_00005357 mRNA downstream 509041 34240084 ~ 34243269 (-) True XLOC_002901
TCONS_00005354 mRNA downstream 528743 34171674 ~ 34223567 (-) True XLOC_002898
TCONS_00005355 mRNA downstream 551560 34187231 ~ 34200750 (-) True XLOC_002899
TCONS_00005366 mRNA upstream 100040 34872195 ~ 34889053 (-) False XLOC_002904
TCONS_00005368 mRNA upstream 117173 34889328 ~ 34907477 (-) False XLOC_002905
TCONS_00005369 mRNA upstream 133825 34905980 ~ 34916208 (-) False XLOC_002905
TCONS_00005370 mRNA upstream 136181 34908336 ~ 34915984 (-) False XLOC_002905
TCONS_00005371 mRNA upstream 139735 34911890 ~ 34915886 (-) True XLOC_002905
TCONS_00005358 other downstream 424916 34327262 ~ 34327394 (-) True XLOC_002902
TCONS_00005343 other downstream 718889 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005331 other downstream 1375096 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005330 other downstream 1375224 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005329 other downstream 1375369 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005381 other upstream 212463 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005403 other upstream 597682 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005406 other upstream 848178 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005408 other upstream 882090 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005410 other upstream 1391024 36163179 ~ 36163294 (-) True XLOC_002926

Expression Profile

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