RNA id: TCONS_00058642


Basic Information

Item Value
RNA id TCONS_00058642
length 1827
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_029942
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 15350954 ~ 15357819 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTAACCCTTCTTGCACAACAGCCGTGAGTCACCATGCCTGTGGATATCAATGAATGGACAGGTTCTCTAGCGCTTACAGAGGTGGAGGAACCGCCAGCAAAGCCTCTCACTGTCAAATATGACTCTGTGGAGATTGACTCGCTGGGAAAAGTGTGCACACCCACGCAGGTGCAGAATCGGCCCACATCTATTGAATGGGAAGGATGTGACCCGAGTAAGCTCTACACGCTGGCCATGACTGATCCAGACGCACCCAGCCGAAAAGACCCCAAATTTCGGGAATGGCATCACTTCCTTGTGGTCAACGTGAAAGGTAATGACGTCTCCAGTGGATGCGTCATGTCAGACTATGTTGGCGCAGGACCCCCGAAGGGAACTGGTCTCCATCGTTACGTGTGGCTCGTTTATGAGCAGTCGGggaacatcagctgcactgaacGAGTCCTCACCAACCGCTCTGGAGACAACCGAGGAAAATTCAAGATCCAGAGCTTCCGCAAGAAATACAGCCTCGGGGCTCCGCTCGCAGGCTCCTGCTTCCAGGCCGAGTGGGACAACTATGTGCCCAAACTTTACGAACAGCTGGCTGGCAAATAAAGACTGTTAATTACAATGTATGTTATCCTTTAGTCCAGTGATTCTCAACCACGCTCCTGGagaaccaccaacactgcatgtttggatgtctcctttgttcATCAAACCCatcacaggtctttcagtctctgctaatgagctgatgatctgaatcaggtgtttgCTTAAGGAGacaggaaaatgtgcagagctggtggtcctccaggaacgtggttagGAAATACTGCTTTAGTCTGAAGAGCTCAACTCAATACAGTTTCagtagtttaaagggatagttcactcaaaacagCTGATTCTGTCGTTTATTCTTTACTTTTTCCCAAatgagttttgttttctttattctggtgaatacaaaagaagttattttgaagaaagtcggaaaacattgacttccatagtatttgttttttcctgctatggatgtcagtgtttatcagtttccagcattcttcaaaatatcttcttctgtgttcaacagaagccaGAAATGAAGATTTTGAAACATCGTAGAgtgtgtacattttcatttttgagtgaactttctCTTTTAGGGTTGTCTCGATACTGGAATGTGGcaccaatcaatactgaaatttgaaaatttcccgctaacatttgcgCGCTATTGAGCATgatcttaaacagcgctgatttgccattgtgttcacatgctcaacagaaaacaCTGTGATTGGgcttgaaggtcatcagttcaacGAACTCACCAGTGGTTTCTGCGTtgtccctgtatccgTGGCCActctcagtaaacagcggtgagtttgcttaactgatgacctttatggccaatcacagtcatttctgttgagcatgtgaatgCAATGGAAAATCTGCGCTGTTTAAGAATGCACTCAAATTTTAGTTGGAAAATAGACTTTTcaaatttcagtattgattggtaccgAACTCCAGTATCGTGATAACACTAAtccctttaaaaaacaattaatgaaCTGTTTTTGTTTGGATTTTTGCTTTAAATGAATTTCAGGTCTTATTTTGCTTTGGTTGAAATGGAATTTAATTTAACAAGTAACTTCAGTCTACACTTTCATTCATTGTCACTTTGCTTTGATGCACTTAGACTGTCTTCAGTTAAAAAAAACGAGATTTGTGTAATCATAGCTGCACTATAAAATACAGTATCTCAATAATGGAAAAGACTCCATTGAAAAAACTGGATAATAAAAGACAATGTTACg

Function

GO:

id name namespace
GO:0043409 negative regulation of MAPK cascade biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2621 Predicted to be involved in negative regulation of MAPK cascade. Is expressed in retina. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human PEBP1 (phosphatidylethanolamine binding protein 1).

Ensembl:

ensembl_id ENSDART00000061653

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061672 lncRNA upstream 43492 15305135 ~ 15307475 (+) True XLOC_029941
TCONS_00061413 lncRNA upstream 384617 14965817 ~ 14966350 (+) True XLOC_029939
TCONS_00061671 lncRNA upstream 1020949 14327332 ~ 14330018 (+) True XLOC_029937
TCONS_00061412 lncRNA upstream 1229234 14098342 ~ 14121733 (+) True XLOC_029936
TCONS_00061670 lncRNA upstream 1674940 13665923 ~ 13676027 (+) True XLOC_029934
TCONS_00058646 lncRNA downstream 381439 15739252 ~ 15801364 (+) False XLOC_029944
TCONS_00061673 lncRNA downstream 401750 15759563 ~ 15807373 (+) True XLOC_029944
TCONS_00061414 lncRNA downstream 563111 15920924 ~ 15923469 (+) False XLOC_029947
TCONS_00061415 lncRNA downstream 563133 15920946 ~ 15921913 (+) False XLOC_029947
TCONS_00061416 lncRNA downstream 563462 15921275 ~ 15922211 (+) False XLOC_029947
TCONS_00058639 mRNA upstream 135484 15203421 ~ 15215483 (+) True XLOC_029940
TCONS_00058638 mRNA upstream 136091 15202495 ~ 15214876 (+) False XLOC_029940
TCONS_00058635 mRNA upstream 1346761 13870340 ~ 14004206 (+) False XLOC_029935
TCONS_00058636 mRNA upstream 1347101 13891202 ~ 14003866 (+) True XLOC_029935
TCONS_00058634 mRNA upstream 1700891 13647323 ~ 13650076 (+) True XLOC_029933
TCONS_00058643 mRNA downstream 137538 15495351 ~ 15513778 (+) False XLOC_029943
TCONS_00058644 mRNA downstream 137557 15495370 ~ 15513763 (+) True XLOC_029943
TCONS_00058645 mRNA downstream 310061 15667874 ~ 15817204 (+) False XLOC_029944
TCONS_00058648 mRNA downstream 461838 15819651 ~ 15830201 (+) False XLOC_029946
TCONS_00058649 mRNA downstream 461892 15819705 ~ 15839404 (+) False XLOC_029946
TCONS_00058637 other upstream 708698 14642152 ~ 14642269 (+) True XLOC_029938
TCONS_00058617 other upstream 2051553 13299331 ~ 13299414 (+) True XLOC_029924
TCONS_00058616 other upstream 2054545 13296307 ~ 13296422 (+) True XLOC_029923
TCONS_00058615 other upstream 2061534 13289353 ~ 13289433 (+) True XLOC_029921
TCONS_00058614 other upstream 2062061 13288828 ~ 13288906 (+) True XLOC_029920
TCONS_00058647 other downstream 385324 15743137 ~ 15743253 (+) True XLOC_029945
TCONS_00058656 other downstream 1671485 17029298 ~ 17029414 (+) True XLOC_029952
TCONS_00058672 other downstream 3775623 19133436 ~ 19134910 (+) False XLOC_029967
TCONS_00058694 other downstream 4719881 20077694 ~ 20077810 (+) True XLOC_029982
TCONS_00058714 other downstream 5317120 20674933 ~ 20675050 (+) True XLOC_029996

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000071_03357812_03360727.mRNA True 960 mRNA 0.43 4 CI01000071 3357416 ~ 3360727 (-)