Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00058646 |
| length | 1530 |
| lncRNA type | retained_intron |
| GC content | 0.44 |
| exon number | 9 |
| gene id | XLOC_029944 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 15667874 ~ 15817204 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030154 | cell differentiation | biological_process |
| GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0042551 | neuron maturation | biological_process |
| GO:0043484 | regulation of RNA splicing | biological_process |
| GO:0007399 | nervous system development | biological_process |
| GO:0007409 | axonogenesis | biological_process |
| GO:0021754 | facial nucleus development | biological_process |
| GO:0008380 | RNA splicing | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003723 | RNA binding | molecular_function |
| GO:0003729 | mRNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050208-34 | Predicted to enable mRNA binding activity. Involved in several processes, including mRNA splicing, via spliceosome; nervous system development; and regulation of RNA splicing. Acts upstream of or within axonogenesis; facial nucleus development; and neuron maturation. Part of U2-type spliceosomal complex. Is expressed in nervous system; neural plate; and neural tube. Orthologous to human SRRM4 (serine/arginine repetitive matrix 4). |
| ensembl_id | ENSDART00000145273 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00061672 | lncRNA | upstream | 431777 | 15305135 ~ 15307475 (+) | True | XLOC_029941 |
| TCONS_00061413 | lncRNA | upstream | 772902 | 14965817 ~ 14966350 (+) | True | XLOC_029939 |
| TCONS_00061671 | lncRNA | upstream | 1409234 | 14327332 ~ 14330018 (+) | True | XLOC_029937 |
| TCONS_00061412 | lncRNA | upstream | 1617519 | 14098342 ~ 14121733 (+) | True | XLOC_029936 |
| TCONS_00061670 | lncRNA | upstream | 2063225 | 13665923 ~ 13676027 (+) | True | XLOC_029934 |
| TCONS_00061414 | lncRNA | downstream | 119560 | 15920924 ~ 15923469 (+) | False | XLOC_029947 |
| TCONS_00061415 | lncRNA | downstream | 119582 | 15920946 ~ 15921913 (+) | False | XLOC_029947 |
| TCONS_00061416 | lncRNA | downstream | 119911 | 15921275 ~ 15922211 (+) | False | XLOC_029947 |
| TCONS_00061417 | lncRNA | downstream | 120440 | 15921804 ~ 15922504 (+) | True | XLOC_029947 |
| TCONS_00061418 | lncRNA | downstream | 184433 | 15985797 ~ 15986751 (+) | True | XLOC_029948 |
| TCONS_00058643 | mRNA | upstream | 225474 | 15495351 ~ 15513778 (+) | False | XLOC_029943 |
| TCONS_00058644 | mRNA | upstream | 225489 | 15495370 ~ 15513763 (+) | True | XLOC_029943 |
| TCONS_00058641 | mRNA | upstream | 381433 | 15350954 ~ 15357819 (+) | False | XLOC_029942 |
| TCONS_00058642 | mRNA | upstream | 381439 | 15350967 ~ 15357813 (+) | True | XLOC_029942 |
| TCONS_00058640 | mRNA | upstream | 385465 | 15350954 ~ 15353787 (+) | False | XLOC_029942 |
| TCONS_00058648 | mRNA | downstream | 18287 | 15819651 ~ 15830201 (+) | False | XLOC_029946 |
| TCONS_00058649 | mRNA | downstream | 18341 | 15819705 ~ 15839404 (+) | False | XLOC_029946 |
| TCONS_00058650 | mRNA | downstream | 18341 | 15819705 ~ 15840485 (+) | True | XLOC_029946 |
| TCONS_00058651 | mRNA | downstream | 191291 | 15992655 ~ 16126906 (+) | False | XLOC_029949 |
| TCONS_00058652 | mRNA | downstream | 316507 | 16117871 ~ 16126563 (+) | True | XLOC_029949 |
| TCONS_00058637 | other | upstream | 1096983 | 14642152 ~ 14642269 (+) | True | XLOC_029938 |
| TCONS_00058617 | other | upstream | 2439838 | 13299331 ~ 13299414 (+) | True | XLOC_029924 |
| TCONS_00058616 | other | upstream | 2442830 | 13296307 ~ 13296422 (+) | True | XLOC_029923 |
| TCONS_00058615 | other | upstream | 2449819 | 13289353 ~ 13289433 (+) | True | XLOC_029921 |
| TCONS_00058614 | other | upstream | 2450346 | 13288828 ~ 13288906 (+) | True | XLOC_029920 |
| TCONS_00058656 | other | downstream | 1227934 | 17029298 ~ 17029414 (+) | True | XLOC_029952 |
| TCONS_00058672 | other | downstream | 3332072 | 19133436 ~ 19134910 (+) | False | XLOC_029967 |
| TCONS_00058694 | other | downstream | 4276330 | 20077694 ~ 20077810 (+) | True | XLOC_029982 |
| TCONS_00058714 | other | downstream | 4873569 | 20674933 ~ 20675050 (+) | True | XLOC_029996 |
| TCONS_00058725 | other | downstream | 5456854 | 21258218 ~ 21259238 (+) | True | XLOC_030005 |
