RNA id: TCONS_00005520


Basic Information

Item Value
RNA id TCONS_00005520
length 1001
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id XLOC_003004
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40489637 ~ 40490637 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACTCATGGCCTATGAGACAGAGGATCAGGAGACTCAATACTGCTTTCCTGACATCAACTCATCATGTGTTAAAGGACGACACTCAAGTCATGGATATATTGCATATTTGCTTGTGTCATTGCTGTCAGCATGGACTGTGTTTCTGAATCTGCtggtgatcatctccatctctcacttcaaGAAGCTTCACACTCCAACCAACATGATTATTCTCTCTCTGGCTGTAAATGATCTGTTTATTGGACTCATCATGCCTATAGAGGCAGTCAGACTGATTGAGACGTGTTGGTACTTTGGAGACACTTTCTGTAACctctatttaatttttattgtaatactTCTCTCAGCATCTCttagtaatttagttttaattgctGTTGATCGTTATGTGGCTGTGTGTCACCCTCTACTGTACCCACAGAAAATAACCATCACTAAAACATTTATGTGTATCTGTATGTGCTGGGTTTGCTTTTCAGCTTACTGCACTGCCCTTGTAATCAATAATAGTTATTTTGACCCTTCACACAGAACAGGTGTGTGTTATGGACAGTGTTTAGTCCTGATGAGTTTTAGTTGGACAGTCACTGATCTGTTTGTGGGTTTTATTTTCCCTTGTGCGctgataataacattatatttgaGGATTTTCTATGTCGTTCATCTGCAAGTGAAGGTTATAAACTCTCTGATGAAGGGTGGTAAAAGTGTAACTGAGAATTTGTTAAAGAGGAAGTCTGAGAGTAAAGCTGCTCTGACTTTAGGATTCATTGTGACTGTTTATCTGCTTTGCTGGATTCCTTTCTATATCTGTTCTCTTACTGTATACTCTTCCACAGCTATGAATGTTTTAATATGGGCTGTACATTCTAACTCAGGTCTGAATCCTCtggtttatgctttattttacccCTGGTTTAAAAAGACAGGGAAACTCATTTtaactctgaaaatatttcagccGGCATCCTCTTTTATAGTTGTGCACAACATTAATTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006122 lncRNA downstream 1399549 39087325 ~ 39090088 (-) True XLOC_002973
TCONS_00005778 lncRNA downstream 1825403 38663993 ~ 38664234 (-) True XLOC_002970
TCONS_00005474 lncRNA downstream 1962927 38511908 ~ 38526710 (-) True XLOC_002969
TCONS_00006121 lncRNA downstream 1974106 38511908 ~ 38515531 (-) False XLOC_002969
TCONS_00006120 lncRNA downstream 2058542 38412930 ~ 38431095 (-) False XLOC_002967
TCONS_00005521 lncRNA upstream 7522 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005779 lncRNA upstream 130344 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00006123 lncRNA upstream 360500 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005562 lncRNA upstream 877471 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00006124 lncRNA upstream 1492272 41982909 ~ 41986276 (-) False XLOC_003040
TCONS_00005516 mRNA downstream 4997 40472282 ~ 40484640 (-) False XLOC_003002
TCONS_00005519 mRNA downstream 5106 40483512 ~ 40484531 (-) True XLOC_003002
TCONS_00005518 mRNA downstream 9726 40478928 ~ 40479911 (-) True XLOC_003003
TCONS_00005517 mRNA downstream 15009 40473603 ~ 40474628 (-) False XLOC_003002
TCONS_00005515 mRNA downstream 17742 40471629 ~ 40471895 (-) True XLOC_003001
TCONS_00005522 mRNA upstream 11733 40502370 ~ 40503416 (-) True XLOC_003006
TCONS_00005523 mRNA upstream 16892 40507529 ~ 40508557 (-) True XLOC_003007
TCONS_00005524 mRNA upstream 22975 40513612 ~ 40514643 (-) True XLOC_003008
TCONS_00005527 mRNA upstream 33070 40523707 ~ 40524741 (-) True XLOC_003011
TCONS_00005528 mRNA upstream 36606 40527243 ~ 40528259 (-) True XLOC_003012
TCONS_00005514 other downstream 20243 40468372 ~ 40469394 (-) True XLOC_003000
TCONS_00005507 other downstream 70578 40418807 ~ 40419059 (-) True XLOC_002993
TCONS_00005503 other downstream 85306 40403994 ~ 40404331 (-) True XLOC_002989
TCONS_00005499 other downstream 105205 40383782 ~ 40384432 (-) True XLOC_002985
TCONS_00005497 other downstream 113641 40375010 ~ 40375996 (-) True XLOC_002983
TCONS_00005525 other upstream 26112 40516749 ~ 40517598 (-) True XLOC_003009
TCONS_00005526 other upstream 30186 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005531 other upstream 46803 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005540 other upstream 250693 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005547 other upstream 412484 40903121 ~ 40903237 (-) True XLOC_003029

Expression Profile

//