RNA id: TCONS_00005519


Basic Information

Item Value
RNA id TCONS_00005519
length 1020
RNA type mRNA
GC content 0.38
exon number 1
gene id XLOC_003002
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40472282 ~ 40484640 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACTCCTAACAGGAGGAGACTCACTCATGGCCTACGAGACAGAGGATCAGGAGACTCAATACTGCTTTCCTGACATCAACTCATCATGTGTCAAGGGGAGAAGCGCAAGTCATGGATATATCATCATCTATGTGTTTGTGTCATTGTTGTCAGCATGGACTGTGTTTCTGAACCTGCtggtgatcatctccatctctcacttcaagaagcttcacactccaaccaacatgattattctctctctgtctgtggcTGATCTGCTTGTTGGATTCATCATGCCTGTAGAGGCCATCAGACTGACAGAGACATGTTGGTACTTTGGAGACACTTTCTGTTCActctatttattatatattgcGGTACTTCTTTCTGCATCTCttagtaattttgttttaattgctCTTGATCGATATGTGGCTGTGTGTCACCCTTTACTGTACCCACAAAAAATAACCATCACTAAAACATTAATGAGTATCTGTCTGAGCTGGGCTTGCTTCTCAGCATATAACATTACCTTTGTTATTTATAATGGATATTTTGACACTTTATACAAAACAGATGTGTGTTATGGACAGTGTTCATTCATTATGAGCTTTCATTGGATAGTCACTGATCTGTTCATGTcttttatttttccctgttttCTGATCATCACTTTATATTTGAGGATTTTCTATGTCGTTCATCAGCAAGTGAAGGTTATAAACTCTCTGATGAAGGCTGGTAAATGTGTAACGGAGGGTTCAGTGAAGAGGAAATCTGAGAGTAAAGCTGCTCTGACTTTAGGAATCATTGTGTCTGTGTATCTGCTTTGCTGGAttccatactatatctgtacatTAACTGTAAGCTCCTCcacaattataaatgttttgacaTGGGTTGTCTATGCTAACTCAGGTCTGAATCCTCtggtttatgctttattttacccCTCGTTTAAGaagacatttaaacacattttaactctgaaaatacttcattctgcATCCTCTCTTATAAATATCTTTACAGAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060414-14 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000142464

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006122 lncRNA downstream 1393424 39087325 ~ 39090088 (-) True XLOC_002973
TCONS_00005778 lncRNA downstream 1819278 38663993 ~ 38664234 (-) True XLOC_002970
TCONS_00005474 lncRNA downstream 1956802 38511908 ~ 38526710 (-) True XLOC_002969
TCONS_00006121 lncRNA downstream 1967981 38511908 ~ 38515531 (-) False XLOC_002969
TCONS_00006120 lncRNA downstream 2052417 38412930 ~ 38431095 (-) False XLOC_002967
TCONS_00005520 lncRNA upstream 5106 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00005521 lncRNA upstream 13628 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005779 lncRNA upstream 136450 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00006123 lncRNA upstream 366606 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005562 lncRNA upstream 883577 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00005518 mRNA downstream 3601 40478928 ~ 40479911 (-) True XLOC_003003
TCONS_00005517 mRNA downstream 8884 40473603 ~ 40474628 (-) False XLOC_003002
TCONS_00005515 mRNA downstream 11617 40471629 ~ 40471895 (-) True XLOC_003001
TCONS_00005513 mRNA downstream 20618 40461869 ~ 40462894 (-) True XLOC_002999
TCONS_00005512 mRNA downstream 28827 40453660 ~ 40454685 (-) True XLOC_002998
TCONS_00005522 mRNA upstream 17839 40502370 ~ 40503416 (-) True XLOC_003006
TCONS_00005523 mRNA upstream 22998 40507529 ~ 40508557 (-) True XLOC_003007
TCONS_00005524 mRNA upstream 29081 40513612 ~ 40514643 (-) True XLOC_003008
TCONS_00005527 mRNA upstream 39176 40523707 ~ 40524741 (-) True XLOC_003011
TCONS_00005528 mRNA upstream 42712 40527243 ~ 40528259 (-) True XLOC_003012
TCONS_00005514 other downstream 14118 40468372 ~ 40469394 (-) True XLOC_003000
TCONS_00005507 other downstream 64453 40418807 ~ 40419059 (-) True XLOC_002993
TCONS_00005503 other downstream 79181 40403994 ~ 40404331 (-) True XLOC_002989
TCONS_00005499 other downstream 99080 40383782 ~ 40384432 (-) True XLOC_002985
TCONS_00005497 other downstream 107516 40375010 ~ 40375996 (-) True XLOC_002983
TCONS_00005525 other upstream 32218 40516749 ~ 40517598 (-) True XLOC_003009
TCONS_00005526 other upstream 36292 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005531 other upstream 52909 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005540 other upstream 256799 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005547 other upstream 418590 40903121 ~ 40903237 (-) True XLOC_003029

Expression Profile

//