RNA id: TCONS_00061507


Basic Information

Item Value
RNA id TCONS_00061507
length 246
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id XLOC_030800
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 6198080 ~ 6198325 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tattatattcatttatcaaaatctaactataatgtcaacactttactctgaaatgcttcaacaccgagaatttaactctgatgaatttgctgtgtagttcagttcagtgtggtttaattttcactgctgagagtccaaacactgaagagcaaatccattgatgctcagctccacaagtcccagaCTAAGCATGCCAGTGGCGAAGAACAAAATtttaccaattgatgaaagtgaaggggaAACACT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061931 lncRNA downstream 147355 6042066 ~ 6050725 (-) True XLOC_030799
TCONS_00061930 lncRNA downstream 693655 5499803 ~ 5504425 (-) True XLOC_030795
TCONS_00061929 lncRNA downstream 693779 5499803 ~ 5504301 (-) False XLOC_030795
TCONS_00061928 lncRNA downstream 693779 5499803 ~ 5504301 (-) False XLOC_030795
TCONS_00061927 lncRNA downstream 695735 5499803 ~ 5502345 (-) False XLOC_030795
TCONS_00061508 lncRNA upstream 113168 6311493 ~ 6312518 (-) True XLOC_030801
TCONS_00061510 lncRNA upstream 272700 6471025 ~ 6472754 (-) False XLOC_030804
TCONS_00061509 lncRNA upstream 272700 6471025 ~ 6472754 (-) False XLOC_030804
TCONS_00061932 lncRNA upstream 273640 6471965 ~ 6472734 (-) False XLOC_030804
TCONS_00061933 lncRNA upstream 273640 6471965 ~ 6472751 (-) True XLOC_030804
TCONS_00059937 mRNA downstream 367043 5708576 ~ 5831037 (-) True XLOC_030798
TCONS_00059936 mRNA downstream 528201 5666864 ~ 5669879 (-) True XLOC_030797
TCONS_00059935 mRNA downstream 542241 5614620 ~ 5655839 (-) True XLOC_030796
TCONS_00059933 mRNA downstream 803745 5311993 ~ 5394335 (-) False XLOC_030794
TCONS_00059938 mRNA upstream 152003 6350328 ~ 6377865 (-) True XLOC_030802
TCONS_00059939 mRNA upstream 203102 6401427 ~ 6433577 (-) True XLOC_030803
TCONS_00059940 mRNA upstream 290935 6489260 ~ 6508250 (-) True XLOC_030805
TCONS_00059941 mRNA upstream 317416 6515741 ~ 6561376 (-) False XLOC_030807
TCONS_00059942 mRNA upstream 317885 6516210 ~ 6567464 (-) True XLOC_030807
TCONS_00059924 other downstream 1255368 4942598 ~ 4942712 (-) True XLOC_030789
TCONS_00059909 other downstream 1971460 4223515 ~ 4226620 (-) False XLOC_030776
TCONS_00059873 other downstream 3985292 2212672 ~ 2212788 (-) True XLOC_030748
TCONS_00059869 other downstream 4235671 1962282 ~ 1962409 (-) True XLOC_030744
TCONS_00059868 other downstream 4237880 1960073 ~ 1960200 (-) True XLOC_030743
TCONS_00059943 other upstream 332742 6531067 ~ 6531182 (-) True XLOC_030808
TCONS_00059948 other upstream 730709 6929034 ~ 6929148 (-) True XLOC_030810
TCONS_00059949 other upstream 949966 7148291 ~ 7148407 (-) True XLOC_030811
TCONS_00059951 other upstream 1233100 7431425 ~ 7431523 (-) True XLOC_030814
TCONS_00059954 other upstream 1434370 7632695 ~ 7632819 (-) True XLOC_030816

Expression Profile

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