RNA id: TCONS_00061927


Basic Information

Item Value
RNA id TCONS_00061927
length 2039
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_030795
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 5499803 ~ 5504425 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATCTGTCTTTAAGTGTCATTTGCACAGTCATGTCATATTACATTTTTGAGATACCTTCGTTATGACAGCTTGACATAAGCTAATGTGTTATAACTTTGTCTTTGTCATAacaacttgacattatcaagacaaaATAACTTGTCAtgaatctgtcataaacatgatagtCCATTATGGTTGCATCATGAATATTTTTTTGATGGCTTTTGTCATTGGAGCTGTTCTGTGAAAGTGTCATTACTCTGTGGAATAATTTAACAAAAGCATCATAAATATTTAACGACATTTTAATGACCAATTCAATTCGTACAACTGTAGTTTAAGAGGTCAAGAGAAATATTAATGACGCAGTTATAACATTTAAGACACAATTGTAATGGCCTCATGatgatcatgtttatgacagatttatgacaagttatattGATGTCAATTTGTCACGACAGACTAGTTATATTATAAGCATGCAAACAAAAGTTATATTGTCCTGATAAAGTCACGTTGTCACGACAAAGACAAAGCCAGGTTATGATGTATAAGTTTATGTCAAGATGTCATAACGAAggcatctcaaacaatgtcaccttCGCATTTAACATGACTTAACTGTGCAAATGACTCTTAACGACAGTTGTCATTAGCATGgaaacaaaatgttaaatattcttgataatgtcaagttgtTGTAACAAAGACAGgttataatgtatttgtttatgtcaagttgtcataacgaAGGCATCTCAAACActgtcacctttgcatttaacATGACATAACTGTGCAAATGACACTTAacgacagttgtcataagcatgcaaacaaaaaattcaattgtcttgataatgtcaagttgtcgCAACAAAGACAAAGCCAGGTTATGATGTATTAGTTTGTCAAGGTGTCATACCGAAGGCATCTCAAATAATATCAGCTTtggatttaaaatgacaactgtCCAAACGACACTTAaagacagttgtcataagcatgcaagTTATATTGTGTTCATAATGTCAAGTTGTCGCAACAAAGACAGGTTATAATGTATTCGCTTATGTGAAGTTGTCATAACGAAGGCATCTCAAACAATGTAACTCATGCATAAAAAGACATAACTGAGCGAATGACATTTAAAGACAGCTGTCGGACAactatcatgtttatgacagatttataacAAGTTATATAGTCTTGATAATAATGTCAAGCTGTCGTGATAAAGACAGGTATGATGTATTCATTTAAAGGCATCTCAAATAACACCAGCTTtggatttaaaatgacataactgcgCGAATGACACTTAAAGGCTGTAGTCATAAGCATGCAAAGCAAAATAGAGTCACGTCATGATCATAAAGCTGTCGTGACTTCCTTacgaacaccccttcaagtaaagtgctgCCGCTTAACATCTCTGAAACATACGGGAACGGCTAATACGGTTTCGCTTGCTCATTCTGGCTTTTCGAAGTTTCCGACTGCGTTGGTTTTGGTGCGCGTTTATGTACAGTTCATTTGTAGGCAGTGGAAGAAGGAAGTCTTTGAAAACTGACGCAAAACAGCAGCAAGTTCTCGGCCCTTGGCATCCAGAGTCCAGCTGATGGTTTGGTCTGGTCTGGGCGATGGCTAATATCTAAATGTTCAGTCAGATTGTTGGTTGGTTTTGCGAGTACATTCGAGTGACAGCGTGGAGCTTTAGTGCTCTGATATGATTACGGACCATCAGCTCTCGGAAAGGCTGATTTTCTCCATCTGGAACAAGACCACGGCGTTCTCCTCTTTCTTAGGTTTTTACCTTTTTGATGTTCCTCTGTTCCTCACACAGGCCCGTCTCTTTCTCTTGGTCTAGAGTTGGCTGAACGGTTTCATCCTCCAGCTTTACTGGCCTGACTTTTTGTCCTTCTGGAAACTAAAGCTCGTGCGGCGGCTCAGTTTGCGCTGTTTCTGGGCAAAATAATCCGCTCTCGATGTGCTGGCACGAGACTCCAGGATGTAGTTCACCTGGgtgaaaaaaaacagcaacacatTCTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061926 lncRNA downstream 198055 5298861 ~ 5301748 (-) True XLOC_030793
TCONS_00061925 lncRNA downstream 341630 5156399 ~ 5158173 (-) True XLOC_030791
TCONS_00061924 lncRNA downstream 592193 4864870 ~ 4907610 (-) True XLOC_030787
TCONS_00059921 lncRNA downstream 765661 4714732 ~ 4734142 (-) True XLOC_030786
TCONS_00059920 lncRNA downstream 802436 4689462 ~ 4697367 (-) True XLOC_030785
TCONS_00061931 lncRNA upstream 539721 6042066 ~ 6050725 (-) True XLOC_030799
TCONS_00061507 lncRNA upstream 695735 6198080 ~ 6198325 (-) True XLOC_030800
TCONS_00061508 lncRNA upstream 809148 6311493 ~ 6312518 (-) True XLOC_030801
TCONS_00061510 lncRNA upstream 968680 6471025 ~ 6472754 (-) False XLOC_030804
TCONS_00061509 lncRNA upstream 968680 6471025 ~ 6472754 (-) False XLOC_030804
TCONS_00059931 mRNA downstream 105335 5302932 ~ 5394468 (-) False XLOC_030794
TCONS_00059932 mRNA downstream 105468 5309495 ~ 5394335 (-) False XLOC_030794
TCONS_00059933 mRNA downstream 105468 5311993 ~ 5394335 (-) False XLOC_030794
TCONS_00059934 mRNA downstream 173793 5313843 ~ 5326010 (-) True XLOC_030794
TCONS_00059930 mRNA downstream 256692 5216969 ~ 5243111 (-) True XLOC_030792
TCONS_00059935 mRNA upstream 112275 5614620 ~ 5655839 (-) True XLOC_030796
TCONS_00059936 mRNA upstream 164519 5666864 ~ 5669879 (-) True XLOC_030797
TCONS_00059937 mRNA upstream 206231 5708576 ~ 5831037 (-) True XLOC_030798
TCONS_00059938 mRNA upstream 847983 6350328 ~ 6377865 (-) True XLOC_030802
TCONS_00059939 mRNA upstream 899082 6401427 ~ 6433577 (-) True XLOC_030803
TCONS_00059924 other downstream 557091 4942598 ~ 4942712 (-) True XLOC_030789
TCONS_00059909 other downstream 1273183 4223515 ~ 4226620 (-) False XLOC_030776
TCONS_00059873 other downstream 3287015 2212672 ~ 2212788 (-) True XLOC_030748
TCONS_00059869 other downstream 3537394 1962282 ~ 1962409 (-) True XLOC_030744
TCONS_00059868 other downstream 3539603 1960073 ~ 1960200 (-) True XLOC_030743
TCONS_00059943 other upstream 1028722 6531067 ~ 6531182 (-) True XLOC_030808
TCONS_00059948 other upstream 1426689 6929034 ~ 6929148 (-) True XLOC_030810
TCONS_00059949 other upstream 1645946 7148291 ~ 7148407 (-) True XLOC_030811
TCONS_00059951 other upstream 1929080 7431425 ~ 7431523 (-) True XLOC_030814
TCONS_00059954 other upstream 2130350 7632695 ~ 7632819 (-) True XLOC_030816

Expression Profile

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