RNA id: TCONS_00062214


Basic Information

Item Value
RNA id TCONS_00062214
length 6522
RNA type mRNA
GC content 0.41
exon number 13
gene id XLOC_031749
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 612330 ~ 627846 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACACTGTGAATTACTTTAGTATGTTTGATGTGGGAGCTGTAATGTGATGCTGTAGATTGAAATGCGAGTCTGAGCTCTTCTGCACGCGGCCGACTAACTGACTCTTCTGGTCTGGTTGGTTTTAGTCTGAAAGCAGAAGTAAAACTGAAGTGAATCAGGAAGAGCTGAATCATGCAGGAAATAATGAACTCTCCAGCAATCATTAGCTCAGATCTGATGTGTTTACGCTCGGGTCAAAGTGCAGAGCGGAAAGTCTGATCCGCTGCAGTATTTGATGGTTCTGTGGAGATGATGGAGCGGATCCTGAGCGTCTGTGAGAAGCTGAAATGCAGCCCGACGTCTCCAACGCTGGCTGAACATCTGGACCAGCGGGATCATCTGAGACACCTGAGAGAACTCTTCATCATCCCTAAAACATCCCAGCTGTCCAAGGTGGATCTCTCTCTTGTGGACAGCTCAGAAGACTGTATTTATTTCGCTGGGAATTCACTGGGCCTTCAGCCCAAAAACACCAAAAAATACATTGATGAAGAACTGGAGAAATGGGCCAAAACAGGCGTTCATGGCCACACGGAGGGGTCGCGACCTTGGGCCTGGGCTGAGGAAACCCTGGAGGAGATGATGGCCAAGATTGTGGGGGCTAAGACTGAAGAAGTGGCTCTGATGAATGGACTGACCGTCAATCTGCACCTTCTGATGCTCTCCTTCTACAAACCGACTCCAAAGCGCCATAAGATTCTCCTGGAGGACAAAGCCTTTCCATCAGACcatTACGCCATCGAGTCTCAGATCCGCCTGCGAGGACTGAACATGTCTGACAGCATGCTGATCATCAAACCCAGACAGGGCGAAGACGTGATCAGGACGGAGGACATTGTTTCTCTAATCGAGCGGGAGGGAGAATCCATCGCTCTGGTCATGCTCAGCGGCGTACAGTATTACAGCGGTCAACTCTTCGACATGGAGACCATCACCACAGCGGGACACAGCAAGggGTGTTTTGTAGGGTTTGATTGTGCGCACGCTGTAGGGAACGCAGAGCTGCGACTTCACGACTGGAATGTGGATTTTGCATGCTGGTGCACTTATAAGtatatgaactCGGGGGCCGGTGGACTGGCTGGTGCATATATACACGAGAGACACGCTCATAGTATTAAACCTGCactGACGGGCTGGTGGGGACATGACCTGAAGACCAGATTCCTCATGAATAACGAAATGGATCTTCAGCCTGGTGTTAATGGATTTCGTCTGTCCAATCAGCCAATCCTACTGGTGTGTCCTTTACAGGCCAGTCTAGAGaTTTTCAATCAGACCACCATGAAGGACCTGAGGAGTAAGTCGGTGCTGCTGACGGCTTATCTGGAGTTTCTGATCCGCCATTATTACAGCAGAGATCCGTCAGATCCAGACAGACCCTCGGTGCACATCATCACCCCGTCGGACCCTCAGCAGAGAGGCTGCCAGCTGTCCCTGAGCTTCAGCAGTCCTATCAGAGCTGTGTTTGAGGAGCTGGAGAAACGAGGAGTCGCTtgtgacATGCGAGAGCCCAATGTTCTGCGTGTGGCTCCGGTGCCGCTCTATAACTCCTTCACAGACGTCCATCGCTTCATCACTGTTCTGGGATCAGCGCTGAGCGCCAGCAGACAATAAACACTGACGACTGACAGATTTCTACTGGTGCTGCATAGAGTTTAATGGAGACTTACTGGCTGCTGCTCTGTAGAGatgtttaaagggacagtacaccccaAAACATTTACATTCCGTCATCATTTCCTCATCCTTTaagcctgtttgagtttcttcactgcaaaaaatgcttttcttacttcaattttttaatatattttgtattgtttctagcccaaatatctaaaaatggccacactttacaataaggttcattagttaatgttaattaatgcatttactaacatgaacaaacaatgaacaatacatttactactgtatttgttcatgctagttaacgttagttaatgaaaatacagtagttcattgttagttcatgttaactcatggtgcattaactaatggtaacAAGCATGGAGTTGGATGtcaataatacattagtaaatgttcaattatgattaataaatgctgtactgaAGTGCActgaagtgttgttcatgattagttaatgttagtaaacgcattaactaatgaaccttattgtaaaacgTTACCctaaaaataatctgccaatggggtgagctaAATCAATTATgtttcttttgacataagatgaTTCTGCTTCCCCCATTGTCAGTctattgtgcttgttttaatgaaaactcgcttcattttgactcattatttctgaaaacaacactatattatttgcttgtctagaaaatgcttcctgattcaGGAATGTTTAGATATCTGGACTGGAAACAAGTCACAAAATCTAAATACGAAAAGCATGTTGTGTAGTGTAAATGATTAAAGTTTTACAACCACTTAATTGAGTAAATGATTGGGAaagttttcatttctgggtgaactgccCCCTTTAACATGATGATACTGTCAGCATTATAGAAAACTCCTTCAATGTTCTTCATTTCAGCTTCAGTACAGGATGTTTTGCTGATAATTGAAATGACCACGGAGTACATACTGTAAAACAGgaattaaagggtcagttcacccaaaagtgaacactttctcactgtttactctcccttaagtgattttaaacctttatgagtttccttcttctgttaaacaccaaagaagatattttgaagtatgttgcaAACCAGTAACCATCGacttacagtaaaaaaacaaatactatagaagtcaatggttacaggcttccaacattcttcaaaatatcttcttttgtgttcaatagaagaaggaaactcataaaggtttgaaacacgTAAAGAGAGAGTCAATGATGAAAGAATTCTCAATTGTGTGTAACATAACACAGTCATCGAGCAGCAGGAGTGTGTTCAGCACAGTCAAACTCAATCATTAGTGAGTGTTCACATGAGAGTCAGTGGTACTTTGCACTGGGGTGAGTTATTGattaatgaactttttttttttactcttgtttctagtcaaattatctacaaattcttaaaccatgagcattttctagacacataaaaatatttgtcttgtgtttttccgcacaacaagcaaaataatcttgttttccttttgacataagactGCACATCCCCCCCGCTCCCCCcttgacagattattttgcttattttcagGAAAAACTTACTTTATTTGGACTCATTATGTCTGTAAACAACACTATATCTTGtgcttgtcaagaaaatgctacttgctttaaaatgttttcgaTATAAGGACTAGAAAcaagcaacacaatctcacggcaactcgtaactttttcatttagtggctaattcgtatgaattcgtacgatctaattcgtacaatttagtacgatttgcttatcccccaatgacggttggggttaggggtggggtcaggtgccacgcctcctttttaaaatcgtaccatttcgtacgactgaactcgtacaaattcgtacgaattagccactaaactggcaaaacgtaaaatacttacgttttctcgtgagatcaggctgaaacaAGTAAGAAAAACATATATTTCTTGCAGTAAACCAAGCTTCTAGACAACATGTGATTTTCAGAAGCTTCATTAAACCTGAGAGTCTCTTATGATGATCTGAACTCTGTATTCGACTGCGAGTCTCTTTTCAGAGTCTGAGTGAATCTTGATCAGGGCTGCCCAAACCtttttgtatgaagggccaaaaaccaaatatcaatgaGAGCCATGCTGAAGGTAAATATGTaagtatattacattaaatttgccatgggtgATTTATACATTCATCTTtcatcatggggagaacatgcaaaatcctcaaagaaatgccaactgacccagcccggaTTGGAAcctgctgtgaggtcacagtgctaaccactgagcctaatttcctaatttatttaaaagtgtttcaaattaaatagaaaacattgaatcatattaactaatgcagtataactgataataatgcaataaaaacatgaacagtCTCACTGATAACACAGTGGAGATCAGCGCTGAGTACACTGGTCGAGCAGAGTCTGATTTGCTCACGGAAGGCTCTGCAGTGTCAGGTGACAGgtgtgtgcatttaaacaaaatctgattcattgacaccatttaattgaaacatttcatttcacttATAAgacaaacaaattacattaaattagagTTGACAATCtcgaaaccatccccatcatcTCCCTCCTCGTCTCAGATGGGATGTcaggccaaatcaaagattaccaTGGGCCAGCTTTGGTCTGTGGGCTCTAGTTTGTGCATCGCTGATcttgatgaggtgtgtttatccACACGTCGCTCTGTCCTTCTTGTAATCAGTTTTTCTGAATGAGGAACTCCTCAGATTGACTTCTGCAGGGCTTGTTTGCTTTGCGTTTGTATGAGTATCATTTAGAAGATGATTGACCGTGTTTTACACACCGGTGTGTGTCTGTAAATGTTTGCGCAGCAGGTTTATTGTCTTGTAAAGCAGGAACATCGACTAACCGTGTGTGTTTCTCTGGGTGTCACCCGGTTTGCAGGATAATAATCATACACAGACTTGGACTTTGGCATGAGCTGTGAGTCTGACTCCATATTAGGGTCtattacactttttttattgaCTTGATGATATGAAAATCTATGCTAGAGCTTTATAATCATTGCGGAACAAATTTCTCAGCTTGTATTTACATCTGAACTAAAACTTTAAGTTAGAATTTGCCTGTGGTATTAATGATTTTGGGGGTGACTGCATGTATggacactcaccggccactttattaggtacacctatccaactgctcgcTAACGCACAattctcatcagccaatcacatggcagcagctcactgcatttaggcatgcagacatggtcaagaggatctgctgcagttcaaagcgagcatcagaatggggaagaaatgggatttgagtgactttgagcgtggcatggttgttgctgccagacgggctgctctgagtatttcagaaactgctgatctactgggattttcacgcacaaccatctctaggctttacagagaatgctccgacaaagaggaaatatccagtgagcggcagttctgtgggcgcaaatgccttgttgatgccagaggtcagaggagaatggccagagtggttccagctgatagaaaggcaacagtaactcaagatCTCAATATCTGCTGCCATATttagatggtcgggtcagaatttggcctcaacaacatgaaagcatggatcatcctgccttgtatcagcggttcaggctggtggtggtggtgtaatggtgtgggggagattttctttgggtccattagtaccaattgagcatcaacgccacagcctacctgagtattgctgctgaccatgtccatccctttatgagcacagtgtctccatcttctgatggctacttccagcaggataacgcagcatgtcataaagctcaatcatctcagactgctgaacatgacgatgagttcactgtactcaaatggcctccacagccaccagagctcaatccaatagagcagctttgggatgtggtggaacgggagattggcatcatggatgtgcagccgacaaatctgcagcaactgcgttatactatcatgtcaatatggagcaaaatctctgaggaatatttccagtagcttgttgaatctctgccatgaagcattaaggcagttctgaaggcaaaagagagcCCAACCCgggactagtaaggtgtacctaataaagtggccgtgagagtatatatattcaaataatgATTTTCTTTTAGTTTCACTGTGagatcattattattagcccactttattatacattaaaatagaaCTGATAATTTTGGctacacagaacaaaccactgttatacaatgacttgcctaattaccctaacttcaccctaattaccctagtgaagcctttacatgtcactttaagctgaacactagtgtcttgaagaatatccagtctaatattatgtCCTGTCATTATGGTAAATAGGATGAAATTtgatgaaataatattaatattattaacagtatAAACAGAAATATTATGGTTAAAGATTAATCTgctcttgggaaatatttgaaaaataatttcacAGAAGGGTGAATAATTTCCCCTCCAGCTGcatataaacattattttgttgttgaaaataaacattgacttcaaatgttattatatattcaaatatataagcttattttattgaattttattctATAATAACTAAAAACACTGAGAAACGGAAAttataagacatttaaaaaaaggaactaattaaaaactgaaattaatattaattaaacttaataataaaactttaatcGTGTCTGTGTGTTTGATGTACTcaatatctaaataataa

Function

GO:

id name namespace
GO:0097053 L-kynurenine catabolic process biological_process
GO:0019805 quinolinate biosynthetic process biological_process
GO:0043420 anthranilate metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0009435 NAD biosynthetic process biological_process
GO:0034354 'de novo' NAD biosynthetic process from tryptophan biological_process
GO:0019441 tryptophan catabolic process to kynurenine biological_process
GO:0006569 tryptophan catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0030429 kynureninase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00380 Tryptophan metabolism

ZFIN:

id description
ZDB-GENE-120215-204 Predicted to enable kynureninase activity. Predicted to be involved in anthranilate metabolic process and tryptophan catabolic process to kynurenine. Predicted to act upstream of or within NAD biosynthetic process and tryptophan catabolic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in hydroxykynureninuria. Orthologous to human KYNU (kynureninase).

Ensembl:

ensembl_id ENSDART00000166872

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062212 lncRNA upstream 15169 594300 ~ 597161 (+) True XLOC_031747
TCONS_00064768 lncRNA upstream 159293 445633 ~ 453037 (+) False XLOC_031744
TCONS_00064769 lncRNA downstream 331411 959257 ~ 960829 (+) True XLOC_031750
TCONS_00064770 lncRNA downstream 436092 1063938 ~ 1065154 (+) False XLOC_031751
TCONS_00064596 lncRNA downstream 437073 1064919 ~ 1079773 (+) True XLOC_031751
TCONS_00064771 lncRNA downstream 657619 1285465 ~ 1285894 (+) True XLOC_031752
TCONS_00064772 lncRNA downstream 741204 1369050 ~ 1369364 (+) True XLOC_031753
TCONS_00062213 mRNA upstream 12642 598669 ~ 599688 (+) True XLOC_031748
TCONS_00062211 mRNA upstream 14165 584632 ~ 598165 (+) False XLOC_031747
TCONS_00062210 mRNA upstream 68637 518979 ~ 543693 (+) True XLOC_031746
TCONS_00062209 mRNA upstream 78782 515181 ~ 533548 (+) False XLOC_031746
TCONS_00062208 mRNA upstream 108047 475264 ~ 504283 (+) True XLOC_031745
TCONS_00062217 mRNA downstream 1097043 1724889 ~ 1740371 (+) True XLOC_031756
TCONS_00062218 mRNA downstream 1159314 1787160 ~ 1799561 (+) True XLOC_031757
TCONS_00062219 mRNA downstream 1402857 2030703 ~ 2092501 (+) False XLOC_031761
TCONS_00062220 mRNA downstream 1402940 2030786 ~ 2092250 (+) False XLOC_031761
TCONS_00062222 mRNA downstream 1403075 2030921 ~ 2092659 (+) False XLOC_031761
TCONS_00062191 other upstream 507608 103361 ~ 104722 (+) False XLOC_031731
TCONS_00062246 other downstream 2537762 3165608 ~ 3165722 (+) True XLOC_031773
TCONS_00062248 other downstream 2590517 3218363 ~ 3249470 (+) True XLOC_031772
TCONS_00062273 other downstream 3199931 3827777 ~ 3838228 (+) False XLOC_031788
TCONS_00062276 other downstream 3206596 3834442 ~ 3850242 (+) True XLOC_031788
TCONS_00062297 other downstream 5056335 5684181 ~ 5684295 (+) True XLOC_031803

Expression Profile

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