RNA id: TCONS_00064469


Basic Information

Item Value
RNA id TCONS_00064469
length 955
RNA type mRNA
GC content 0.49
exon number 2
gene id XLOC_033184
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 51769760 ~ 51771634 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGTCCTTGGAGTGGCACAAATCTACGCAATCACCCAAAGAGCTGAACTCAATGGCGAAGGCTTAAATGCGAGATCAGGATTGAATTTGAAGAATGGCAGGCCTGGTCTCGTATTTGGATAGCACGTCTAATCCCTCACAGACACACAAGGGATTTGTGTTGTAGTAGCGTCACATCGGATATATCTGAGCTCATACAAAGCGTCCCGCTTTCGCAGAGACCATGTACTGCCTCCAGTGGCTCCTCCCGGTCCTCTTGATCCCCAAACCCTTAAATCCGGCCCTGTGGTTCAACCACTCCATGTTCATGGGCTTCTACCTGCTCAGCTTCCTGTTGGAGAGGAAGCCGTGCACCATTTGTGCCTTAGTCTTCCTGGCGGCGCTGTTTCTCATCTGCTACAGCTGCTGGGGAAACTGCTTTCTGTATCACTGCCACGATTCTCCACTGCCGGACTCAGCACACGACCCCAGCATTGTGGGCACCTAGACTTATTTTGTttccccccccacacacacacataccctggATGGTGAGGCGCCAGGAATGCTGGGACGTTTCAGTAGTTTCTACCCACTTTGATGCTGTAAGCGCCGCCTTTGATCCCTGACTTGAATCTCCTTTAGCGCGGCGGTGCAGGAGGGCGTCTGAAGCTTGCATGGGTTCCATTCTCGTTGTGTTCGGTACACATTCTTTCATTTCTGGATGCTGAATTTTTCCAAAGGggtcgatgatgatgatgatgatgatgatgtgtgtgcGAGAGTGTGTGTAAACGTTTGTATATTGCGATTTTTGGGTTTCTGTTCACGTGTCAATAATCAGTATGAGTCTCCTAAGTGTTACGCGGATGAATTTGGTCGCAGGTTGAGCTGAAGGTGTGTGTGCTACACTGCTGAGATCGCTCAAATGCTGTCAACACTTTTAATTCAATAAAGTTTCTAATGATCAGAGTCGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000330-7 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in myotome. Orthologous to human BLCAP (BLCAP apoptosis inducing factor).

Ensembl:

ensembl_id ENSDART00000073847

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065238 lncRNA downstream 231212 51528763 ~ 51538548 (-) False XLOC_033181
TCONS_00065237 lncRNA downstream 1264322 50495622 ~ 50505438 (-) True XLOC_033174
TCONS_00065236 lncRNA downstream 1273877 50480139 ~ 50495883 (-) False XLOC_033174
TCONS_00065235 lncRNA downstream 1283255 50480139 ~ 50486505 (-) False XLOC_033174
TCONS_00064757 lncRNA downstream 1285362 50476213 ~ 50484398 (-) False XLOC_033174
TCONS_00065239 lncRNA upstream 254857 52026491 ~ 52034656 (-) True XLOC_033186
TCONS_00064474 lncRNA upstream 460117 52231751 ~ 52234719 (-) False XLOC_033188
TCONS_00064475 lncRNA upstream 460228 52231862 ~ 52234719 (-) False XLOC_033188
TCONS_00064476 lncRNA upstream 462107 52233741 ~ 52234648 (-) True XLOC_033188
TCONS_00064758 lncRNA upstream 1480923 53252557 ~ 53258068 (-) True XLOC_033203
TCONS_00064467 mRNA downstream 103021 51575924 ~ 51666739 (-) False XLOC_033183
TCONS_00064468 mRNA downstream 104306 51580256 ~ 51665454 (-) True XLOC_033183
TCONS_00064465 mRNA downstream 195785 51549203 ~ 51573975 (-) False XLOC_033182
TCONS_00064466 mRNA downstream 213452 51549331 ~ 51556308 (-) True XLOC_033182
TCONS_00064463 mRNA downstream 228272 51529208 ~ 51541488 (-) False XLOC_033181
TCONS_00064470 mRNA upstream 24662 51796296 ~ 51811095 (-) True XLOC_033185
TCONS_00064471 mRNA upstream 310118 52081752 ~ 52156427 (-) True XLOC_033187
TCONS_00064472 mRNA upstream 455048 52226682 ~ 52234796 (-) False XLOC_033188
TCONS_00064473 mRNA upstream 455048 52226682 ~ 52235118 (-) False XLOC_033188
TCONS_00064477 mRNA upstream 567914 52339548 ~ 52348651 (-) False XLOC_033189
TCONS_00064464 other downstream 228272 51531006 ~ 51541488 (-) True XLOC_033181
TCONS_00064457 other downstream 1013312 50754501 ~ 50756448 (-) True XLOC_033179
TCONS_00064456 other downstream 1022215 50744165 ~ 50747545 (-) True XLOC_033178
TCONS_00064455 other downstream 1024505 50744160 ~ 50745255 (-) False XLOC_033178
TCONS_00064454 other downstream 1024831 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064491 other upstream 1151739 52923373 ~ 52923489 (-) True XLOC_033198
TCONS_00064492 other upstream 1261362 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064499 other upstream 1502202 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064524 other upstream 2734824 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064525 other upstream 2735471 54507105 ~ 54507178 (-) True XLOC_033220

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU568165 True 197 lncRNA 0.48 1 CI01000340 15419793 ~ 15419989 (-)
bowfin (Amia calva) AMCG00007938 True 775 mRNA 0.62 2 CM030123.1 37495198 ~ 37496202 (+)