RNA id: TCONS_00065567


Basic Information

Item Value
RNA id TCONS_00065567
length 3652
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_033504
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 13527396 ~ 13572981 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAACATGTACAGAACTAATTTAAGTGCCTggcctgcatattgttgagataaaaaaataaaataaaactctatTGTACttagtactactgacattaaaccagacacaattacaaaattttccattttttaaagacattgaTAATGCTTAAAACACTTAACGAAAATGTgcaaaaattacattaagcatcgaaatcaacagattaaaaataagtaaatcacacaaagcactagaacatgcCTGTTCTAGTGCTAAAACGTTtgtgatatattatttattagcatTCATGATGTAAACACTGTAAAGTAAGCCTGTTATACACTATaatagttcaaaaacactatttacTACTAGTATTTTGTGATACTCAAATCACTTGGCCAACTTTTAGTTAATTTCAAGAAGAAAGGCTAACAatacaaatacataaatgaataggCTAGCTCTGATAATACTTGTTTCAACAGTCGAGTTGTGAGAGGCGCCAAAATGAAACCTGAAATACAAATTCCATTCAAATCATAATTCCCCGTAAAGTCACTTCAGACCTCGCGCtctacattttttgtgtgagAGGGCGAAAGTTTATCGACGGAATTCCTGGCGTTTCGAGGCTGTCTAGATAGTCATCACACTGCGCTTTGAGACGCGGCCCTGGTGTCTCTTTTTGGCAGAGGCAGAGGCTTTTGGGGACTTACCGgaaaccaaactttttttttttcaagcctcAAACTTGTAGCTGCTGCAGAAGTCGAAAGAGGAAAAAGAGCAGCAGAGTCCCGTTACATTTCAGCTCGTCGTACGCAGTTCcttgtttttttctccttcttcttcttcatcgTCATGTTGAATGTGGGAAAGTTGAGACGAAGAGCGATCAACAGTTTTAACCCGAGATAAAGTCCTGCGTCGAGCCTTTTTTCTCCTGCGCATAACGGGATCTTTGTTTTTATAACATGGAAGATGGTGTGAAAGAGGAACCAGCCAAGCCCAAAGAGGTGAAGAGCGCAGAGAAGGCCGGCTGGTTGAAGAAGTCTTCAGGGAAGTTCTTGAGCAGCTACAAGGACAGATACATTCAGCTGGACCGAACCGCCATCGCCGTCTACGAGAATGAGGAATTAACAACATGCCTGGAGAAACTGGAACTGGACAACTACGAGACGTGCCATGAGCTGAAGAGTGCATTCAAGAAGAAACACAGGCTGGTACTAATACGAAGCCCCAAGAGCGGTAACAAGGTAATAATGAACATTTCAGCACAGCAGAACGTCAAATCCATCAGTCTGCCATTGCCTTTTGTATGTGATATAAAGAGTGGCTTACATCAGGATGACAATGCAATGCACAGTTGAGGACGGCTGGCCTGCAGTCGTGACGTCAGCCGTTCAATATGGCACGCACTAGAAACACACTGGCCCATTGTGCCAAGCCTAATGAATCAGACACGTATCTGAACACACACATGACCAATGATGGGCTGGTTCCTCTGGGTCACTGCTTTCAGGGCTGCTTTAAAGGCATAGAtcactgaaaaatgaaaaatccCACAAATGTTACTCCTCATATGCAATTGTTCACTGCTGAGACTCAATTCACATAATATCTGTACGTAACAGTATTGCAGACATCCCACCCTGATCTTGAGAGTCCCCTGCCACAATGATGTAGGCTATAAATCACACAGGATCACTctggtaaaacatgaacacgAAATGGAAAATGAAAGAAACAGCATTAAAAGGGGGTTAATTTTGCCAAGTTTACCAAGTTACCAAGTTTTCAACATGTTTACAGCAATGTCACAGTGTTTAACATTTGAACATTGTGTTGGCCTACTGTATGAAGCAAATAAAACGAAACACAACATCACATCATTTGTTTTGGAAAATGAATAGGCAGTGTCTTAACGTCCATATGAAAGCATCTAAATGTCAGTCttttggcccatttccactgattGTTATGGTATGAAACGGTTCGGTGCGCTTTTTTGGccttttccactgtcaaaaggtaccaaaaagcgaacaGTAATgcaccactttttgggtaccctttacAACAAacgggtaccaaaaggcagaacAAGACGTGCAGCTGGACGCTATTGGTTTACTGAGATACGTCActacaagcaggagaatgaaaacaaagcaaccgccatttttaaatacacattaaatcgtaatactatatacatataataacaagccatggttgcCTGAGCTTAAACAAACtgtgtcgtcgtcttgatgaacagccacaaagccaagaagaacaaattCTGCCATGTCCTGTTATTGTTTTACGAGGCCGtattatgaactctgaatgaAGGATTAACTTTCTAATGATGCGTTCACTCCAGACACGGAAGAAgcgtcaagtgcgagtgatttacatgttaagtcaatgcaaagtcGCGAATGGACATCCTGCAGCACGATACGCTTGAATGACGCAATTCGCGCGAATGAAGCATTGCGAGTGGAGCGTTTTGCGTGATTGACACATGTATCGCGTGTTTTGCGAGTTTCTCCCGAATCACTCgggttcgaaaatctgaactttagcagacAGTGGCGCCTCGTTagccaatcaggagcttgctcttgtgggggcatgataATGATGTAGCGCCTGTTTTTGGTGTCCTGGGGgcaaatcctcctgccgacaccgacaacagttcatcaaactgggctcggctcagtcagaagcaccgctgaaataTTCCATCATCCAGCTTTAGCTTCTAGAGGAGgtgatgagctcacagagctgggtgcacctcagagtggatctagtggactcagacacagctccAAACGAATCAACACTGTTTTTTCAGTCTTCCTAAGGAACATAAagacagctactctctcaataaagccatgttagccatttagcaacaaagccgGACAGAGGCCCCGCCCATGATGCAAATGCATGTCTggtgtgaagtgaatttgacgcgcgaatgaagcgagtaaactcaaaatgttcacacgtcTATTTACACGCAAATAGTATGATTTATCCGCTTTACTGCATCTGGAACACAGCATAACATGTTACATGACAtattacatgtgctggtgaagattaaagatacagatgagaggtttgcattgACTGTAGACTATATGCTGGCTGtcgtttttgaacccaaataaggactaagtgtatgctgtgtgtagtttttctgtgcTGTGTGTAGTATCTGGTAACATATCAGACACTTGTCTGTatgcgttcattcattttcttttcgacttagtccctttatcaatctggggtcgccacagcgaaatgaaccgccaacttatctagcatatgttttacacagcggatgcccttccagctgcaacccatcactgggaaacatccacacacactcattcacacgcatacactacggacaatttagcttacccaattcacctgtaccacatgtttttgggctgtgggggaaaccgaagcacacagaggaaacctacgcaaacactgggagaacatgcaaactctacacagaaatgccaactaacccagccgaggctcaaaccagcgacctttttgctgtgaggtaaacgtgctacccactgtggcacttatttatttatttattttatataatcgcagacGTTACAGTT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-120406-4 Orthologous to human PLEKHO2 (pleckstrin homology domain containing O2).

Ensembl:

ensembl_id ENSDART00000180354

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065566 lncRNA upstream 29109 13497404 ~ 13498287 (+) True XLOC_033503
TCONS_00065564 lncRNA upstream 42608 13481335 ~ 13484788 (+) True XLOC_033502
TCONS_00065562 lncRNA upstream 56248 13455911 ~ 13471148 (+) False XLOC_033502
TCONS_00068556 lncRNA upstream 189113 13337158 ~ 13338283 (+) True XLOC_033500
TCONS_00065557 lncRNA upstream 216407 13242636 ~ 13310989 (+) False XLOC_033500
TCONS_00068788 lncRNA downstream 244770 13797644 ~ 13800139 (+) True XLOC_033509
TCONS_00068789 lncRNA downstream 309435 13862309 ~ 13865084 (+) True XLOC_033511
TCONS_00065589 lncRNA downstream 694785 14247659 ~ 14249247 (+) True XLOC_033514
TCONS_00065592 lncRNA downstream 744561 14297435 ~ 14302293 (+) True XLOC_033516
TCONS_00068791 lncRNA downstream 761477 14314351 ~ 14370213 (+) False XLOC_033517
TCONS_00065565 mRNA upstream 12659 13491452 ~ 13514737 (+) False XLOC_033503
TCONS_00065561 mRNA upstream 40018 13418812 ~ 13487378 (+) False XLOC_033502
TCONS_00065560 mRNA upstream 40018 13418812 ~ 13487378 (+) False XLOC_033502
TCONS_00065559 mRNA upstream 40179 13382852 ~ 13487217 (+) False XLOC_033502
TCONS_00065563 mRNA upstream 45722 13464878 ~ 13481674 (+) False XLOC_033502
TCONS_00065569 mRNA downstream 29382 13582256 ~ 13618498 (+) False XLOC_033505
TCONS_00065570 mRNA downstream 56583 13609457 ~ 13614312 (+) True XLOC_033505
TCONS_00065572 mRNA downstream 86599 13639473 ~ 13679937 (+) False XLOC_033506
TCONS_00065571 mRNA downstream 86599 13639473 ~ 13679937 (+) True XLOC_033506
TCONS_00065573 mRNA downstream 131138 13684012 ~ 13702524 (+) False XLOC_033507
TCONS_00065558 other upstream 187128 13340143 ~ 13340268 (+) True XLOC_033501
TCONS_00065547 other upstream 674179 12853103 ~ 12853217 (+) True XLOC_033496
TCONS_00065544 other upstream 1355150 12172129 ~ 12172246 (+) True XLOC_033493
TCONS_00065536 other upstream 2313872 11213408 ~ 11213524 (+) True XLOC_033487
TCONS_00065525 other upstream 2843789 10683487 ~ 10683607 (+) True XLOC_033482
TCONS_00065588 other downstream 664096 14216970 ~ 14266258 (+) False XLOC_033514
TCONS_00065590 other downstream 728219 14281093 ~ 14281225 (+) True XLOC_033515
TCONS_00065597 other downstream 1580103 15132977 ~ 15133091 (+) True XLOC_033520
TCONS_00065599 other downstream 1727675 15280549 ~ 15293242 (+) True XLOC_033521
TCONS_00065621 other downstream 2651121 16203995 ~ 16204113 (+) True XLOC_033534

Expression Profile

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