RNA id: TCONS_00068791


Basic Information

Item Value
RNA id TCONS_00068791
length 6113
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_033517
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 14314351 ~ 14370213 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttctagcaacaaccggcTAAATCAACATCGCGGTACTTTGATGATGCCACACGTGACAGTGACATGGCGTCGCGCCTTCTGAAAATTTTTAACCGGCATTTACAACGCATGCTCACGCCAATTGGTAACTTTTATCAGTTTTTGATACACTGTACGATCTTATTCGTAGGCCTACAGTTTACTATGATTTGATTACCCTCACCAAAAGAAAACTCACATTTTCATACGAACGACATCGTCTATGAATTCGTGTTCTATGAGTTAATCAGATTTCGATCTGTGCGCACTGTTGCAAGAAGTTGAACCACTCGTTTTGTTGGAGTCGTGTGGCATAAAACAGCTGTGAGCTTCACGACTGTCGAGCCCGAGTCCTGCTCGGGAATCCCAATCCCAGGCTTTTCAGGGCCACTCGTCCAAggagagggggagagagaaaaAAGGCGGGGGAAACCATTTGAAAGCTCCCCCGTAGCTGATACAAAGCTGAGAACAACCCTTCGCCGGATAATCGTGTTTATCCCAAGATTAAGACGAGATCGACAGCTGAGGTATCCAAGGGGAATTTTAccgtaaaaaaacacacacaatggtCTTTAACGCAAACCCAAGAGATGATTCAGAGTGGTTTTCAGCCACTGTTCTTTTCGCTGCTATGACCACAGATGAAAACGATACAGATTGCTCACCTACCACAGATAACTGTCTTCATTAACTCTACCCACTATCAACCTGTCAAAAAATTATTCTATAACAAGTCAAGACACAAAACGACTTTATACAAACTAGATATAATAGTTtattacccatccatccatccatccatccatccatccatccatccaaatatataGGCAAAATAGTATATGATATCTGTCATACAAATATATAGACaaaattatccatccatccatccatccatccatcaaatatATAGAGAAAAtgtgtttctatctatctatctgtctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctactgttttctcattccatccatccatccatttcttatcccatccatccatccatccatccatccatccatccatccaaatatataGGCAAAAAAGTATATGATATCTGTCATACAAATATATAGACAaaattatctatccatccatccatccatccatctatcaaatATATAGAGAAAATGTGTTTACTGTTttctcattccatccatccatccatttcttatcccatccatccatccatccatccatccatccatccatcatctatttATCTAATATATAGACAAAATgtatatccatccacccatccatccatcatacaaATCTACAGACAAAATATGTttctttttatgttgtttaattgatacatgtttaattttatattgtttaatacatacaatatataataataataatactattattattatgattattattagacAATTGTTGtcttaaaaagcaaataaaactaatgcaaaataatatatttagacAATACATCATGTTATTTACCTACACAGTCAATCCCATGAATGATAATCGATTATTATAAAGCTATATAATACactactaataatattactaatatcatagttattattattattattacctgaCTTAAGAAGCACAAGAAGCTAAAACAACTATTTACTATCCACTGTATGGCCATGATTATCTAACATAATCATTCATATCACAAGTATTATTAATCttaaagcaaaatatataatTCATACGTGAAGTGACTTCAATACAAAACCCTAAAAAAATATCAACACAAGTGTGAACTGTCCTGGAAAGCAGAACTAGCGGTTTCCATTACAGCTGCAgtcataaaatatacatttccaaATCTAATCTGACACAAAGTTTTTATCACGAGAGAGAGAAATGAAATCTCACAGAGCTGGCTCTTTCGGAAAAATAAATACGCGAAGCCCTTTAACGCCGGACATAAAGATGACATATGACAGGGAGAAAACTGTTAGTATGCCAGACAAATATTCCCAGATAGCAAACCTCCCATAGGCCTTTGATATTAACATGCCAGCTGCAGCAACTGCCACATGGGGCCACAGACTGAGAGCCAGACAGTAAAAGCCCTCCCCCATCCCACAGCTCGTCTCcaaaactgcacttttttttcttcctccataTCTCTTCAGTTCAATTTAAGATtaattgtatagcgcttttcataataattaatgtaataaaaGTGTGCGctattacattacaatcaaaatgtTATAGGGTGAACAatatgcacactgtaaaaatatccataagttagcagttttctgtattttgtcattcttgtttttatttttcccagtttatttaagcttttgaaTTGCCTCATGGGAGTTTGATCTTCTTTCAACACCCTTTAACCTTGAAAAGATGGAAAAAAGGGACGATTATTAACATctataatagtttaaagtgatatattgtctgggtcggttttgtatattacactacaaaacattgtaataaactgCAAGCACATTTTCCGCTATTTTAGCTTACTTATTTGtctattatttgttatatattatctATCTAAtcatttatacaaatatataagcaaaataagtttatgatatctatctatcatacaaatatatagacaaaatatctatctatctatctatctatccatctatccatctatccatctatccatctatccatccatccatccatccatccatccatccatccatccatctatccatctatccatctatctatctatctatctatctatctatctatctatctatctatctatcaacaacctactaaaatatcaatagaagtctctttgttaaactgtagagttgaattttcaccaTCAAAATCGATGGAGCAGAGattaagctcccataatgcaatttcatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgagtacaCATAGTGTTTGTTGTTTTTGAAGTTGATATCTATTGTGTAATACACTTTTAATGAAGTGTGTTTCAGTGTTTGTGTTTTGCTTAACGTTGTGCTAAGTATATATCTTAACATAAGTTGTTTATCTCAACccatttgtttttctgcaatgcTGGTGTTGAGATTAGAAATCCTTAGTTTCAGCAATCAGATATTTCTTTCAGTGCATCCCATATCAATAATTcctcctttcttttttctttttaatttttttgcgacTGCTGTGAAATGCTGCCGCTGTCCCGGTGCAAACTTTCTCTGTGGTTTTCTGTATCACTGCCTCCATTTTACTGGGTAATATATTGTAATGGAGCTTTAATTAATTGCTTGCCCAACTGCTGTGCCCTGGCAGAAGGGGGGAGAGGAAGGAACTGTCCTTCAAATTCAACTTGAACGCCTTCAATTTGTGATGTGCGTCATGCTTTttatcaaataaacaaactagaCACAAAGCCATGAGTTGCTTTGACTCAAaattgggtcaaatattgacaaagCCAACAGCTCCCACATGACAAAATAGCagagtaatttataataaacactatTGTGCTTTTGAaccctattatattatattacattatattatactttatatttaattatattatattatattataatttattattttatattatattagattatattactATGCTAAAGTATACTGTTGTATTAACTTTAATGTTAATACAATATAACTATATATCCAAAAGTTGTAGAAAACTACTGTATtgtgtcatttgtttatattactatagttgttatgttgccatagcaactatctAATTACCAaatcagattaattcaagtacttaaCTATTTAAAAGATTAACCCTCAAACTTTTTAAGCAACCCAGCTTTATGTAGAGTGCAACATAAAATGCTTCCTTTATATCAGGGATCATCGAACGTGtacctggagggctggtgtcctgcagattttagctccaaccctaatcaaacacacatgaacacgctaatcaaggtcttactaggtatgcttgaaacacccaggcaggtgtgttgaggcaggttggagctaaaccctgcagggcaccggacctccaggaacgagattggtgacccctgccttataTTATACAGCTGGTgaatattttgcatatttaatataatttactatagtattttttcaagtAGGTAATTTAAAAGATTAACCCCTAAGCAGTGGGTTTTGTAGAGTTTATGAAATATACAACATACATAACAACATAAAATGCTTCCCTACTTTATACTAGTAAATATTTAGCATATTTTCTATAAATAACTATAGTATTTCCTCATGTGCGCCgggttaaaaatgttattttaaaagattaaCCCTTAAACTTTGGGTTTAAGCagccaactatttttttttataagtgcaCACGCTTAGATATACAACACAAAATGCTTCTTTTACATTATTTAACTGGTGAATATTTTgcatatttactatatttatatatatatatatatatatatatatatatatatatttatatatatatatttatatttatataaccaTGTGGCTTggttcaaacttttatttaaaaagattaacCCTTAAACTGAGTTTACGcaactagcttttttttttaagtgcacacGCTAAGATATGCATTATAAAATGGTTCCCTTATATTAAACGACtagtaaatattttgtattatttctgGTAATTACTACAGTTTTTTTCCATGTAGGCTgggttaaaaatgttatttaaaagattaACCCTTAAACTTTGAGTTTAAGCAACCAACAATTTTTTTAAGTGCATATACTAAGATATACAACATAAAAAGCGTCCCCTATATTATACAACTactaaatattttgaatattttctaGTAATTACTCCAGTtcttttattataaaacattaaccCTTAAACTTTGGGTTAAAGcaacaaactattttttaaaaagtgcacacACAAAGATATACAACAAAAAAGCTTCACTTATATTAAACAACAAGtgattattttgcatatttaCTAGAacttactttagttttttttttcatgtaggctggtgtaaaaatgttattttaaaagattaaCCCTTAAACTTTGGGTTTAAGCAACCAACTATTTTTTAAAGTgatacaacaaaaaatgcttctccCCCATTACACAACTAGTGAATATTCTGTATAACCACTCTAGTGTGCACTACATACATCACATCTACTGCATGAGGACGATTCCTGACAAGTGTACAATGGTGCTAAAACACACTCTCGACGCAGCCGCACGAAATAAAGCCGTTCCCTGAGGATAGTCTCTTAGGGTTTCGGTGCTAATTTAGGCATCTGGCCCTGTCTGGGCCTGAGCATCTTTCTCAGCTTATTACCCTCCGCTGTCTCTGGCACTCCATCCATACAGACAATGGTGGGAAACAGGGGGGACCGCGAACCCACGTCAAGTGCTCGCCGTACAATGCTGCCATTGTAGAAGAGGAGAGGGGTCTGGAATAATAATGTGGGCACTATCAAACTGTTTACCAACACGGAGTACACAGCGGAAGATTTATGAGGAATCAGCATTAGGGGTATTGCTATCGATGTTTGGATATGTgtgaaaaatatatgttttaatataattaaacatgtttttcttAATAAACTGAGATGCAAATGACCTTATATTGAAGTGATTGCTGTGCCAGACACCTTAAGAGATCTTTCTGCCCTTTTTTTTATACAAGAAAGATATAATCATAGTCATTGCTAAATAAAGATGCACATCCACAAAGTGCATAAAGTGCTTAAgaaagtcatatttatttttatttgaagtattCATCAAGCATGCATTTGAACTGAaataattattgcattattttctCTCTTCTGCTCGGTGCAGAcagaacaaatatttaatttttctcgTGCATGCGTATGGATTCAAACCGTATGCGTTCTGTTTGACTGAAAACACAAAGAACTGGTAAACCACAAAAACAATACACA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0003008 system process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065592 lncRNA upstream 12058 14297435 ~ 14302293 (+) True XLOC_033516
TCONS_00065589 lncRNA upstream 65104 14247659 ~ 14249247 (+) True XLOC_033514
TCONS_00068789 lncRNA upstream 449267 13862309 ~ 13865084 (+) True XLOC_033511
TCONS_00068788 lncRNA upstream 514212 13797644 ~ 13800139 (+) True XLOC_033509
TCONS_00065566 lncRNA upstream 816064 13497404 ~ 13498287 (+) True XLOC_033503
TCONS_00068558 lncRNA downstream 262394 14632607 ~ 14690123 (+) True XLOC_033519
TCONS_00068795 lncRNA downstream 996929 15367142 ~ 15393853 (+) False XLOC_033524
TCONS_00068796 lncRNA downstream 1008301 15378514 ~ 15379359 (+) True XLOC_033524
TCONS_00068797 lncRNA downstream 1041997 15412210 ~ 15416286 (+) True XLOC_033525
TCONS_00068559 lncRNA downstream 1505698 15875911 ~ 15879796 (+) False XLOC_033530
TCONS_00065591 mRNA upstream 11635 14291323 ~ 14302716 (+) False XLOC_033516
TCONS_00065587 mRNA upstream 47885 14211322 ~ 14266466 (+) False XLOC_033514
TCONS_00065586 mRNA upstream 48242 14211322 ~ 14266109 (+) False XLOC_033514
TCONS_00065583 mRNA upstream 107345 13988075 ~ 14207006 (+) False XLOC_033513
TCONS_00065595 mRNA downstream 165870 14536083 ~ 14543964 (+) True XLOC_033518
TCONS_00065596 mRNA downstream 261944 14632157 ~ 14938580 (+) False XLOC_033519
TCONS_00065598 mRNA downstream 895880 15266093 ~ 15306015 (+) False XLOC_033521
TCONS_00065600 mRNA downstream 937829 15308042 ~ 15333427 (+) False XLOC_033522
TCONS_00065601 mRNA downstream 938006 15308219 ~ 15316731 (+) False XLOC_033523
TCONS_00065590 other upstream 33126 14281093 ~ 14281225 (+) True XLOC_033515
TCONS_00065588 other upstream 48093 14216970 ~ 14266258 (+) False XLOC_033514
TCONS_00065558 other upstream 974083 13340143 ~ 13340268 (+) True XLOC_033501
TCONS_00065547 other upstream 1461134 12853103 ~ 12853217 (+) True XLOC_033496
TCONS_00065544 other upstream 2142105 12172129 ~ 12172246 (+) True XLOC_033493
TCONS_00065597 other downstream 762764 15132977 ~ 15133091 (+) True XLOC_033520
TCONS_00065599 other downstream 910336 15280549 ~ 15293242 (+) True XLOC_033521
TCONS_00065621 other downstream 1833782 16203995 ~ 16204113 (+) True XLOC_033534
TCONS_00065625 other downstream 2169722 16539935 ~ 16549089 (+) True XLOC_033538
TCONS_00065626 other downstream 2362461 16732674 ~ 16732790 (+) True XLOC_033539

Expression Profile

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