RNA id: XM_039809606.1


Basic Information

Item Value
RNA id XM_039809606.1
length 1835
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC120564537
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 13393147 ~ 13404145 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGTGCAGGAAGTAGCCTACTCTCGTCAGAGGAAGAAATTGTTCCGAGAACGGGGTGCAACTGGAGAAACTGTTTTTACGTTACGCACTTTATTGAACTTGGACAGTTGGAGCAAATTGAAGAAATTGATGGAATACTTGCGACATATTGGAGTATATAATAAGATATAGCTAATTACTTCTAAGTTGTGAATAGCGAGTAGAGACTAGTGGAGGGCAGCAATACGCCATAGATGCGTCTAGCCTGCCGGAAACatgaagcagaagaagaagaataaggagaagaagaagaagaaaggaagaagaaaggaagaagtTGGCCACGGCTTCGGGCCACGGCAGGTAGGGGAACACGGAAGTGAGGAGCAGGTGATTAATGTGGGCGGTGTTCAGGCTCAGGTGATTGGGAGCCGGATCGCTGGATTCTTCCAGGATCATACCAGCGTTAATATGATCACTGGTCTACCGGGACGTTTTAGTCTACTACAGAAGAGACAAGACAACAGAAATAGGGACGCGAAAAAGTAAATGGTTTAATGGAGAAGGGGAGGAGATGCTTAGAACGCACTTTTATCTACATCCTGGTAGCAGTGATAATCTTCTTCATCTTTCTCAACTGTAACCGGGAGTTGAACTTGAACAGGGCTAATCCAAGACCCCCATCAGCACCAGAGCCACAATGGGAGGATCCTGGGCCGTATCATGTGGCCTATCCACGAGACTACAAGTTTATCATGGATGACACGCGGACGTGCAAGAACACCACTCCTTTCCTGGTCCTGATGGTTCCGGTTGCACCCGGTGACGTGGCAGCACGGGACACCATCCGGAAGACGTGGGGAAATGAGAAACTGGTTCTGAGTCAGCTGATCGAGACTCTCTTCATACTGGGCCGACCGGGGGGAGCTGATgctgagcagcagcaggagaagCTCAAACAGGAGAacctgcagcaccatgatctgATCCAGAGTAACTTCCGGGACAGCTACCGCAATCTGACCATCAAGACAATGGTGATGCTGGAGTGGCTGGCTGTGCACTGTGCCGAGGCTTCCTACGTCATAAAGATTGACTCCGATATGTTACTGCATGTCCCAAATTTGGTTAAGCTGTTGCTGGATCACAGAACGGCCAAACAAAACTACATGACAGGTTTGGTGTGGTGGAACAGCCCGGTTTTGAGAAACCCCTTCAACAAGTTCTACATGCCAACAAAAGTGATTGCTGAGCCACAGTACCCTCCATATCCTCTGGGCATGGCCTACGTCATGTCCCTGGACCTGCCTGCCAAGATCCTGGTAGCCGCTCCTCATATTAAACCGATCTTCATAGAAGATGCCTACCTGGGTATGTGCCTAAAATACTTGGGCCTCTCCCCCACCGACCCTCCTGAAAATAATATGTTTATTGTGAAACCTGCACATCCTCTGAGCAGCTGCAGCCTTTCAAAAGTGATCGCCATGACAACGACAAGCATCTCACAGATGACGTGTTACTGGGAGAGGAGCAGACTGCCAGAAGCTAAATGTTAAACTTTTGTCTTGTTTACCAACACTGAATCGGACAAATATTGTACAGAAATTAAAATTGtgcatatttattttgtttgcagACATGGAAGCTCCTTGGTTGGAcagaaattgtttgttttttgttcaacAGACAAAACCGATTTTGACCAAATGCCTTCTTGTTATCAAATGTGCTTCTCAGCCAGCCGGGCTTTCAGAATTTTCTGAGCTGTATCAGCTCTCACACAGTGAAGAACATCTGCTGTATTCTAAACTTAAAATAAACCGTGTTTGGTGGGTTATCTCCTGAAAAACTCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5571 lncRNA downstream 121490 13195046 ~ 13272174 (-) True G4066
TU5521 lncRNA downstream 236447 13089192 ~ 13157217 (-) True G4032
TU5634 lncRNA upstream 83779 13487920 ~ 13491997 (-) True G4115
XR_005639134.1 lncRNA upstream 115860 13520001 ~ 13536248 (-) True LOC120558524
XR_005639135.1 lncRNA upstream 361052 13765193 ~ 13767856 (-) True LOC120558530
TU5895 lncRNA upstream 614761 14018902 ~ 14021031 (-) False LOC120558548
TU5892 lncRNA upstream 614809 14018950 ~ 14021031 (-) False LOC120558548
XM_039809592.1 mRNA downstream 1629 13384811 ~ 13392035 (-) True LOC120564530
XM_039814278.1 mRNA downstream 35962 13322665 ~ 13357702 (-) True LOC120567325
XM_039815025.1 mRNA downstream 228138 13140281 ~ 13165526 (-) True LOC120567925
XM_039809733.1 mRNA downstream 278524 13107306 ~ 13115140 (-) False LOC120564587
XM_039816259.1 mRNA upstream 4592 13408733 ~ 13415673 (-) False LOC120568624
XM_039816252.1 mRNA upstream 4592 13408733 ~ 13411986 (-) True LOC120568624
XM_039799369.1 mRNA upstream 24299 13428440 ~ 13474559 (-) True LOC120558389
XM_039799493.1 mRNA upstream 194589 13598730 ~ 13607821 (-) True soul5l
XM_039799341.1 mRNA upstream 206158 13610299 ~ 13623167 (-) True LOC120558365
TU5471 other downstream 353430 13037280 ~ 13040234 (-) False LOC120560438
TU5472 other downstream 353430 13037280 ~ 13040234 (-) True LOC120560438
TU5473 other downstream 353430 13037280 ~ 13040234 (-) False LOC120560438
XR_005639486.1 other downstream 365271 12991667 ~ 13028393 (-) False LOC120560419
unassigned_transcript_56 other downstream 527625 12865968 ~ 12866039 (-) True trnac-gca_3
TU5715 other upstream 127612 13531753 ~ 13567266 (-) True G4168
TU6167 other upstream 1308062 14712203 ~ 14719102 (-) True LOC120555938
TU6236 other upstream 1497009 14901150 ~ 14904209 (-) False ubl5
TU6504 other upstream 2022403 15426544 ~ 15429556 (-) False sdk1a
TU6856 other upstream 2941629 16345770 ~ 16347922 (-) True LOC120558720

Expression Profile