RNA id: TCONS_00065891


Basic Information

Item Value
RNA id TCONS_00065891
length 5497
RNA type mRNA
GC content 0.46
exon number 8
gene id XLOC_033680
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 24049776 ~ 24068953 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAATTCAAAACCAAGAAGGCCAGGGTAGGGCGAAGCCTGGCGGAGCGAGACGCGTTATCcccaaagaaagaaaagaaaaacaacagcCGTGCATCGCAGTCTTTTTGAGAAGCTATGATTTGCGGCGTTTGACTCTACTTCTGTATTTGCAGATGCTTTTTTTCAGACATGTGAACCGAACGGTTCCGTTCGTGCAGCAGCTGTCAGATGTGATGAAAGTCACAAACCCAAAAGGACAGCAATCATGGTTTTGAGAAATTGATCTTTCTGGATAATAAAGCCATTGCATTTGCCACTGCTGCAAAGTTATTGGGAAAACCATGCAAAAATGAGGATGAGTCACACAGGACACGTGTGAATGGGATACAGCTTCTTTGAAGAGCTCATGTGGAGTTAACACATTCAAAAACTGTGGTGAAACGGCTTCAAACATGTCCCTTTCGACTGTACTCGCAAAGGCACTTTTTGATAATGCTGCTGAAAGCCCAGAGGAGTTGGCTTTCCGTAAAGGGGATATCCTGATGGTTTTGAACCAGGAACAGGATGGGGGACCAGGGTGGTGGCTTTGCTCCCTGCATGGCCGTCAAGGCATTGCCCCTGCTAACCGATTACGCCTGCTTCAAAGTACTCAAGCTCCGGCTTCGAGTGCAGGTACAGATGCCCGACGAGCTCCTAGTGTGGACTCTGTCCATCTACCTTCTAGCCAGCAGGGCAAGGTAAATGGATTGAGTGCTGAAGATTCAGATGGGGTGTATCTCTCACCACCCAGCTTAGCTGAAGGGGTGTATCAGAGCCCTGGGGCTGCTCCTGCCCAGTGCAGGTCTGGAGAGCTACGCCACTCTGATGCAGGAAGGCCACGATCGCATTCTAGTTCTGGAACCAGGCCTCGTCCGGACTGGGGGGATGTTGGTGTGGCGGGACGACCCCGCTCACCTTCACTTCGAGGACGGGGTGGTGAGTCAGGAACCCTCTACCAGACACCCAGCTCTCCTGTGCCACTGGCTGCACAACACAGATCACAAGTTGCATTGCCAACAGATTCAGTCTACCTGACTCCAAGTGCTGTCTCTAGGTCTGCCGCAGAAACAGCAGGGGAGTCGAGGTATTTAAGTCCACGAGATGCAAGTGCTGGGCATTCTGATGGATGCTACTTAGTTCCTAGACCAGCTGTCACCACACTGACAAGTGAGAATTTATATCAGACTCCTACAAGTGGTGCCCCAGTGGCAGGACAGTGTGTAGCAGGAGTGACTTCTAGACTTGTGGATAAGATAGCTCCTAAAAGCAGCCCATCTTCTTCCAGTAGTCCATCTCAGAGTAAGAGTGGCCAGGATGCCCCAGGTATGTACCAAACTCCAACCCCACCTGGAGGAGCCATATCAAGGACCCCTCAATCTGACCGTAAAAACCCAGCTGGAACTGTAGTAGTGTCTAATGCCTCAACACCAGGCCAAAACATAAAGCAGACACCTCCATCTGGACGAGGATCCCAAAAGGGTACTACCTCAACTGCTCCTGTTGGTCGAGGAAAACTGAGAGAATCCCCTCTACTCACTAGGACGGGAAAGTCAGGAGTACCCAGCTCCCCAAACTTTGGCCGGAAACCCCCTCCGCCAGCACCTCCAGTTAGAAGTGTAACCAGGAAAGATTTACCTCAGTCTAGCGCAATTCCAGCGACCAAACCTGTTCTCCAGGCAAACCCTGCTCCCCCACCGACAAACATGCTGGAGGAGGAGAGACAGGGAAGTAAAAGTGGACAGACGCAAGCCGACGAGATGAAGAACAACAGCGAAATGCTGAGCAAGAGAGACAGTGCCAGTTCGCAGGAGGAGAAACTTAGTGAGGAGGTATATGATACACCTCCCACTAATAGGTGGCAACATCCAGTTTCTATAGTGCCTTCTGAGGAGGATGATGGGATTTATAACACTCCTCGTGCTCTAATCGTACACAACGACCAGGCTTCTGAGATTTATGACGTTCCCACCCTGGCCTTGAATTCCTCAGAGCATCAGCAGCAAACCTACAATATTCCAGGATCTGCTGCTGCGATTGGAGATGCAGAGGATGAGGATGTGTACAGTGTTCCCAGTCTTCCTGGTTTACCCTTGGAGGCAAGCGAGCTGTCGGGATTAACTGTAGAAACGGTTGTAAACGGACGTAGCTATTCGATTTCCAGTCTGAGAAAGCAAGACGCAATTGACGATGTGTCAGAACCTGATGGAGGCATCTACGACATGCCTGCCCTCAATCTGGAAATCCCAACGCGCCGCTTGTCTGTATCAAGCACCGGCTCCGGGGACATCCAGTGGAAAACGTCACTCTCGGCTCTAGTCCAATCCGCTTTGACCTCCGCCTCTCTCCCCACCACCCCATCCCGGGACTTCGCTGCTGCCTTGGCTGAGATCCTTTCCATCTGGAAGGCTGGCCACGTTGGAGATATTCCTCCAGTTCTTCAACATGCTTGGTCACGTCTTTCTGACCTCCTGCCTGCCCTCTCGGTGTGCGGTACTGCCCCTCCAGCAGACGGTCTGCTCTCCATGGTCCGCGGTGCTCTTGAAGACTCTGCTGCCCTTTTACAAAGCCAAACACGACCTCGTCTACCTTCCCAGGACTCTCTGTCCCGGAGGCCTCTACCTGCATTGCCAGTGGCAGAGGTCAAACCCATAGCAGGGGACATGGGGTCACGGAAGGGCAGCTGGATTCAGGAACGACCGCTGCCGCCTCCACCACCGGCTGCCTTCCCATTGCCCCCAGCACCAGTTTCTTTAGTTCCTACTGTGGGAAGGATGGAGGATGAGGAACCAGGCAATGAGTATGCAGGAATCGGCCTCACTCCTACACCACCGCCATCATATCCTGTAGGTGATAGTGTGGGATACGTCAAACTGCAGGGGAAGCCAGAGCCTCCACCAGACACCCATACAGAGCACAGTTCTTCACAGCTTATCACCTCAACTGATAATAAATTGAGTCCTTCACCACCAGTCTCTATGTCTCTGGAGGATTCAGAACTGCTCTCCTTCTACTCTTCTCAGAGTCTCTCTCATCTTTCTTGTCTGGCTGATGCCATCGACTCCCTGTTTACAAGTGTCCAAGGGAACCAGCCACCCCGAGTCTTCGTTTCCAGGGGCAAAAGTCTCATCGTGACCGCACATAAACTTGTCTTTATCGGAGATACACTAGCACGGCTTCTCAGCTCTTCAGATCTCAGAGCAAAGGTCACCACCTCCAGCGGACGCCTCTGCCAAGCTCTGAAGGCTGTCGTCGTGGCAACCAAGGGCGCAGCCCAGAATTATCCTTCAGTTCCTGCCACGCAAGAAATGGTGGACAGAGTAGCGGATCTATCCCAGCATGCAGCTGGCTTCTCGGGGCTCCTGCAGCGATTAGCTGAGATATCTTAATGTTATTCGTGAGGAGtttttcctttattatttttttcacagtggaatgccttattatttttgttatttttataaatatatatatatatatttcataaatgACTGCGCTTGAAGAGGTATCAAAAGCCTGTCACTGCTTGTATTAGTTAAACAGTGATCAAACAGTGTGTGTTGGAGTGTATCTGCTTGCCTGTGTAAGTTGACACTATAGAGTggtgcttttcttttctttttttgtggtgCCAAGCacacttaaaatgttttaataacttattgatGGGTGTTTTGTTTGAAGATGTTTGCAACCTCAGGCACATTTTAATAGCTTTATTTTGTCCCCTTAATCATATTGGCATCAAACAATGTAAAAGTGGTCTCTGTTTAAGGGTGCTCTTGTAAACTGGTCTCATGTTCAGTTTGTTTGTAAATGTGAAGTGGCCTTGGTGTTATAGAGATTGAAGTGATTTATTTCACAGCCCGGGGAGGGTTTAGTTGTACTGCAAAATGTTACCAAATCTGATAAAGCTAACCGGGATTCAGAATGCTTGATTATTTAAACAGACATACTatttgaatgagagaacagatCGTTTACTGAATTTCTGGAAGTGAAATCAGATAGATTATTTTCCCACAATGCTGATTCAGAGATAAACCTGTCTGTCaggtccactttttttttttcactcactGCTTTATTTTCTCTTCCCACAATTCTCACACTCCCACAGTCGGTTTTTACACATGCTCACCAAGGCAGCTTAAAGGTTTAGGCAACAACTcttgcacaatatatatatatataaatataatacaggGTTTTTGTTTTGAAACAGGCTATGCAGCATTTccgaaaacagcaatatatatcTATCAGAAGCTTCCATGGTGGCTGGCAGTCGAAATGCTGGTGCTTACAGTAGTTCATACACTAACTGACTCGGTTTTAACCGAACTAAGCTCTGCTAACACAGGTCGAAACATGCACCTGTCTTGAAAAATCAAGTCATTGTCATAAATGTACTCTCATGTTTACAAGACGCCCTCATAGTCCGTAAGTCAAAGCCCATTCCTCCATCTGTTGATTGCTCCATCTTCTCTCTCGATTTGTCTGTAAATATACCCACATCTCCTCATTTTATATTCAGGATTTACATGTTGGCCACCGATAAAACGCTGTCAGTgttaatattgctgtttgattTGACTGGTTCATTGTGTTTTTACAGTGACTTGCATTTTAAAGATTTAGCCATAACATGTCACAGTTTAAATCTCAAGTAGCCTTGCTTTTATTACTGCCTTTTCAGGTAAAAGTGGcctttttagtttttacatattttgtcagTCGTATCACAATGGAAGCAGCgggtttggtttttaaaaatcgAATTGAGTGGATTGAGTTGTTTGGATGGATTACTCTGGTGTTGGTTGATTTAAAGTGCCATCTTGTGGACTTTATCAGTATTACTACACCACATACTTGGATTAGATTAAAGATAATAATAACAGGGCACCTAGACAGTTACTTCAAAGTATTCATTTAAACATTTGCTGGTAGAAAAATAATATTGCCTTTTAATAAGATTTCATTTCCTTCTGTACAAAAATATCTCTGTATATATTCACACTGCATTACCACAATAGTCCTCAGAAAGCAAGCGTTCCTCTCAGAAATCTCACCAACTTTGTTTGTCTTATGTTCTTAAATTAAGTGCTTACAGTAATGCTTAGATTTGATGGCCCTATAtagttatatttatttgattttgttaaTCAAACGTCTGCATGGCTTTAAGTTGCTTATTAAAAGAAATATGCACATATAACCAGGGATGTTTCATGCGACTTTGCATTTAATAATTCAAGGTTTGCTTTTGAGaatgtgatttttttgtttgttggtttttgttttcatttggtACCCGAATGTATTTTGACATGCATATTTTGTGCTTCTTGACACTGTCAATGTTCATTTCGACATTTTGTTTGTAAGACACGCTCCACAGGTACTTTGCATTTAGGGAGTATTTGGTTCTTGTCAAATGGTGAGATTCTGCAAAATACAGTTTTGTTAATGAATCCA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1658 Predicted to act upstream of or within cell adhesion. Orthologous to human EFS (embryonal Fyn-associated substrate).

Ensembl:

ensembl_id ENSDART00000166559

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065888 lncRNA upstream 28658 24018851 ~ 24021118 (+) True XLOC_033678
TCONS_00065885 lncRNA upstream 100019 23946061 ~ 23949757 (+) True XLOC_033675
TCONS_00068820 lncRNA upstream 292586 23748479 ~ 23757190 (+) False XLOC_033672
TCONS_00068821 lncRNA upstream 292586 23752830 ~ 23757190 (+) True XLOC_033672
TCONS_00068571 lncRNA upstream 485208 23563748 ~ 23564568 (+) True XLOC_033670
TCONS_00065897 lncRNA downstream 18300 24087253 ~ 24090237 (+) True XLOC_033681
TCONS_00065903 lncRNA downstream 127589 24196542 ~ 24200584 (+) True XLOC_033688
TCONS_00065905 lncRNA downstream 141118 24210071 ~ 24215155 (+) False XLOC_033690
TCONS_00068572 lncRNA downstream 141498 24210451 ~ 24212560 (+) True XLOC_033690
TCONS_00068822 lncRNA downstream 388076 24457029 ~ 24464316 (+) False XLOC_033694
TCONS_00065889 mRNA upstream 9715 24023653 ~ 24040061 (+) False XLOC_033679
TCONS_00065887 mRNA upstream 35888 24006875 ~ 24013888 (+) True XLOC_033677
TCONS_00065886 mRNA upstream 47532 23997518 ~ 24002244 (+) True XLOC_033676
TCONS_00065883 mRNA upstream 84215 23940933 ~ 23965561 (+) False XLOC_033675
TCONS_00065884 mRNA upstream 84215 23943597 ~ 23965561 (+) False XLOC_033675
TCONS_00065892 mRNA downstream 468 24069421 ~ 24097070 (+) False XLOC_033681
TCONS_00065896 mRNA downstream 12214 24081167 ~ 24091112 (+) False XLOC_033681
TCONS_00065898 mRNA downstream 45741 24114694 ~ 24117151 (+) False XLOC_033685
TCONS_00065900 mRNA downstream 46129 24115082 ~ 24117202 (+) True XLOC_033685
TCONS_00065901 mRNA downstream 84117 24153070 ~ 24162868 (+) True XLOC_033686
TCONS_00065890 other upstream 9720 24033901 ~ 24040056 (+) True XLOC_033679
TCONS_00065870 other upstream 687531 23362162 ~ 23362245 (+) True XLOC_033668
TCONS_00065868 other upstream 764625 23285035 ~ 23285151 (+) True XLOC_033666
TCONS_00065856 other upstream 1228960 22809948 ~ 22820816 (+) False XLOC_033661
TCONS_00065845 other upstream 1248911 22796083 ~ 22800865 (+) False XLOC_033659
TCONS_00065893 other downstream 3428 24072381 ~ 24072484 (+) True XLOC_033682
TCONS_00065894 other downstream 5908 24074861 ~ 24074975 (+) True XLOC_033683
TCONS_00065895 other downstream 7758 24076711 ~ 24076821 (+) True XLOC_033684
TCONS_00065899 other downstream 45923 24114876 ~ 24117144 (+) False XLOC_033685
TCONS_00065907 other downstream 194670 24263623 ~ 24263739 (+) True XLOC_033692

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_00665765_00675919.mRNA True 5387 mRNA 0.45 9 CI01000026 664946 ~ 677250 (+)