RNA id: TCONS_00065984


Basic Information

Item Value
RNA id TCONS_00065984
length 4095
RNA type mRNA
GC content 0.50
exon number 17
gene id XLOC_033726
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 26006819 ~ 26026538 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGCGCTAAGATGGCTTCAACGAGCTGGCTGCATGGCCCCAACATTACTCGTTTAACGGAAGGGCTGGTGTCCGTTTTAAAGGAGGAGAGACCTGAATTTCTACCCGCTCTTCTAGCAAACTACCGTGAGCATGCAGCGGTTGGGACTCAGAGCTCTGGAGCTGTGGGTGGTCTGGTGGGCCTCAGTAATGCTCGACTTGGGTCCAGTAAAACCAGGTTTGAAGGCCTGTGTCTCCTGTCTGTGCTGGTAAAGGACAGTTCCAGTGAAGTGTTTCAGCAGCATTGCCTGTCATGGCTGCGAACACTACAGCAGATCATCCAGTCGCAGGCTCCTCTCCCGACCGTGCAGCTGGCTGTGAATGTGCTGCAGGACATGTTACAGTACTCGTCTCAGCTGCCGGAGCTGGCCAGAGAGGTGGGACTCAACTCCATCTTGGGCGTCCTGACCTCACTGCTCAGTCTTAAATCAGAGTGCCACCTAGCTGCTATGAAGGGAATGATGGCGTGTATGACCTACTACCCACGAGCTTGCGGATCTCTGCGGGAAAAGCTTGGAGCATATTTCCTCTCAAAAATGGACTCAGATAATCCAAAAGTACAAGAGGTGGCTTGTGAGTGTTATGGCCGATTGCCCTGTCTGGGGGGAGTGTTGGAGCGAGGTGGAGGTGGGCGCAGGGCTGAAGGCTGGACCAATCAGCTCCATTGCCTTCTAGCATCAGCCAATAGCATACTGGGACAGCTTTATCATGGTGCAGAAACGGAAGGGACAGTTCAGTATGAGGGTCCCGGTGTGGAGCTGCCTTTCCCCCCTCTGGATGATGTAGATCCACTTCTGATCCTTCAGCTCCAACATCGCTACAAGGCTGTTACTCTAGCTATGAAGCACACACTTAGTGTTGATCCTGCATCTTCAGTCCGTCTACCTGTCCAGCATGTGCTTAATTTATTGTGTCGAGCTCTGGCCGTCAACACAAAGAGCATTAGTCCAACAGGTGATGGATGTCAGAAGCTGTTGGTTTTACCCtcaatacacaatgacactctgGAGTTGCTTTCTGCCCTCATCAAAGCTGTTGGTGGTGGACTGGTCCAGTATAGCAGTGTGCTCACAAGGCTTTTCTCTCAGTCTTTGTCTGCATGGACGCCTCTGCCTGAGGCCAGTCTTGGCCAGCAGAGAGCATACAGTGCTGTGCGAGTGGCTGTGTACCGCCTCATAGAACTGTGGGTAAGAGTTGGAGGAGCCGCTCTGCTTCAGGGAAGCCCTTCACACACAGAATTACTGTTTACTCACCTGATGGGTGACGTGACACCAGGATCAGAAGCAGTCAAGCTTCGTTCTGTGCAACAGTCATCAATGACTGACCTGATTGGCTCTGCTGGCAAGTCTGGTCCTCGTCGAGCTAAAGGAATGGGTGAAGGATTGACGATACAGAGGAAAGGAGATGTGCTCGCAAATCAAGACACGTGCGTCGCTGCTCTTCGGGCATTGAGACAGATCGTTTTGACCAGTGGCACTTTGCTAAAAGAAGAACTGCATAAGAGGATCCAAGACCTGGTGGTTCCTCTGTGTGTGCGTTTGCAGCAGCAGGCTCACTGTGTGCAGGAGGTCGGGGCTATCAGTGGACAGTATGGCAGTCCTTCTCCTCGCCGCGAGCTCTATCGAGTGTTACTTGCACTTGTGTTGGTGCCCTCTCCCCGCTGGCCTCCTCCACTGTCTTGCGCTGTGTCCATCTTCAGCCACGGCCGCAGAGACCGCAACATCAAGGTATCTTCATTTTGTGCTGAAGCTCTGATCATATGCAACACTCTTATTCATCCTCGCACACCCTCAATCTCACTCCCTCTCACCCCTCTAACTCTCAAATCAACCCCATCGGCCCCTGTCCTAGCCTCTGGCCAAAACTCCTCACTATCAATTCCTACCCTTCTTGGTGGACCCACAACCGGGCCACCTTTCCCTGCAAGGCATCCGATGGGGTTAGGCCCTGCTAATCTCCTTGGATCTCTGGAGAACCATCTACCATTGGCACCTCAAGTTCTGTCATCTTCAGCAGGCACACCAGGTGACTTGCTGCTCTCCCCCGCCCAACCCGGAGAACTGACAGGACTCGGAGTCCCTGAAGGTCAGCGGCAAGTTTTTGTTCGCTACGACAAAGAAGAGCCAGATGATGTGGAGATCTCTTTGGAAAGTGATTCAGATGATAGCGTGGTCATCATGCCAGCTGGTATGATGATGGAGATGCAAGATGGAGCAGCAAATACACAATCGTTGTCTCAACCAGCAGTTTCAACAGTAGGAGGTCTGCAGACCTCCACCCCAGTGGTGGGTGAGGTTGGATCAGCTGACACATCTTCAGCTAATGAGCTGCCTGGCTCCATTCCCCACCAGATTCTGCCCGCTAATAACATTAACTCCTTCCCTGGACCAAATCAAACAGCTCAGCATGTGGCTATAGTGCCACCTCTGAACTCTGCCACAGCCTCACTCTCAGCCACAGTCGTCGGTCTTGCAGATTCACTAACAGGTGGACCGCAGCTTCAGCAGATGTTGATGCAAACTTCTCCAGGTGGGCAGCCCCCAACTCTGGGCCTGTCTTTGCAGATGCAGCTTCAAAACCAGATTGCACAGACCAGCCGTCAGCTTCAACAGCAGCCTCCAGGAAATGACGTGGACCAGAATGTTATCAACATCAACAGTTCGGATGAcgaagaggaggatgaagaggagctggaggaggaaGATGAATTGggggaggaagaggaagaggaggagggttTGGatgatgaggaagaggaggaaggcAGCGATTTTATAGATGATGAAGAGTACCTTGAGGGAGAGGAATTTGAGTATGAAGACGATGAGggtgaggatgaagatgaagaggAGAGCGAGGAGATCCAGCCATTGGAGGGAGATGATGGCAGAGCGATAATAGGTGAGGAGGAGGCAGAGGTCATGATTGAGCCAGACGAGCAGCAGAGGTTGGAAATGTTCTGCGTTGAGGGAGAACGAGAAGTTGAACCCGGGATCGAGGAGATGGAGGGTGTGAGGAGCATCTATGCCGAGGACAGGATCAAGGAGAAGTCGACTTTGGAGGAAATTGAGAACATTGGAGCGGTTGAGAGAAACGAACCTGTGATTGACAAGCAACAAATAGAGACTCTTGTGATCGGGGGAGATGTAGAGGAGCCTGAGGAGGACACCACTGTGGAGGCAGTTGAACCTGAAGTAAAGGAATGTGAACAGGAAGAGGTGAAGCCAGATGATCCagctgaagaagaagaagaagctggGCCGTCACAGCAGGCTCAGGAAGTGATTGTGGAGGACGAGGTTCAAAAGCAAGAACCAGAATTGCAGCCTGAAGACAAAGCTGATCAGAGTGCTCCATCTACATCTGAACAGGAGACAATAGAGAGTGTAGCTGAGACAGTGGAGGAAGAAAAAGCAACCACTGAGGAGAAAGATGATGAAGAAACAAGAGGCACAAAGAGAAAAATGGAAGATCGCGAGGAAGGAGAGTCTTCTGAACAAGGGTCTGAAAAGAAAAAGATAGATGATGAGGCAATGGCTTCCATGCTGGCTGACTTTGTGGACTGCCCTCCAGACGATGATGATCACGGTGCCTCACAGACACAGTCCTAACATGACCAAACATGTCATACAAACAAACGCCACGTCACCAAAAACCTAGTCCAATCCTGAATGGTCACACATGGTCAAATCTCCCAGATACTGTCCCATCAAACTCTGCTGTAGTTGCACTAGAGAAGCTCCAAAGTGAGAGTTTTAGGATTTCAGGTTCCAAAAGTCCACTATACCTTTTCTTCAATATAACTCTGCAAAAACTGTTTATAAACCTTCTTGGTGGTCCTGGCTAGAGTTTTTCCTATTTGGCAGCTTAATAGAAATATGATGCTTATGTAGTCTCAAGTATTCAAAAGTGTTTTTATCAGCTTTGGCAATATAGGTAATGTTGTTTTGTGgccttgttttgtttctttttttttgtaatatcatTTGTATGTGTAACACATGTCTTTGCATTGTGTTGTATGCAATCATGCAATAAAGTGAACTGGTTACGGCA

Function

GO: NA

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-140106-164 Predicted to be located in cytoplasm and nucleus. Orthologous to human PELP1 (proline, glutamate and leucine rich protein 1).

Ensembl:

ensembl_id ENSDART00000112908

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065982 lncRNA upstream 32314 25920800 ~ 25974505 (+) False XLOC_033725
TCONS_00065978 lncRNA upstream 89748 25913255 ~ 25917071 (+) False XLOC_033724
TCONS_00065975 lncRNA upstream 147352 25858383 ~ 25859467 (+) False XLOC_033723
TCONS_00068848 lncRNA upstream 265889 25737529 ~ 25740930 (+) True XLOC_033721
TCONS_00068847 lncRNA upstream 445627 25557629 ~ 25561192 (+) True XLOC_033719
TCONS_00068849 lncRNA downstream 34181 26060719 ~ 26061569 (+) True XLOC_033730
TCONS_00065990 lncRNA downstream 38197 26064735 ~ 26068968 (+) False XLOC_033731
TCONS_00065991 lncRNA downstream 38680 26065218 ~ 26080014 (+) True XLOC_033731
TCONS_00065995 lncRNA downstream 81938 26108476 ~ 26110054 (+) True XLOC_033734
TCONS_00068850 lncRNA downstream 172876 26199414 ~ 26213850 (+) True XLOC_033739
TCONS_00065981 mRNA upstream 1128 25920792 ~ 26005691 (+) False XLOC_033725
TCONS_00065977 mRNA upstream 88538 25913225 ~ 25918281 (+) False XLOC_033724
TCONS_00065980 mRNA upstream 89429 25915089 ~ 25917390 (+) True XLOC_033724
TCONS_00065974 mRNA upstream 128259 25858380 ~ 25878560 (+) False XLOC_033723
TCONS_00065976 mRNA upstream 129919 25858411 ~ 25876900 (+) True XLOC_033723
TCONS_00065986 mRNA downstream 3134 26029672 ~ 26047946 (+) True XLOC_033728
TCONS_00065987 mRNA downstream 23280 26049818 ~ 26057520 (+) True XLOC_033729
TCONS_00065988 mRNA downstream 32234 26058772 ~ 26060908 (+) False XLOC_033730
TCONS_00065989 mRNA downstream 32234 26058772 ~ 26061610 (+) False XLOC_033730
TCONS_00065994 mRNA downstream 73486 26100024 ~ 26110819 (+) False XLOC_033734
TCONS_00065983 other upstream 21980 25973649 ~ 25984839 (+) True XLOC_033725
TCONS_00065979 other upstream 89748 25913258 ~ 25917071 (+) False XLOC_033724
TCONS_00065972 other upstream 297286 25702443 ~ 25709533 (+) True XLOC_033720
TCONS_00065960 other upstream 960398 25046348 ~ 25046421 (+) True XLOC_033712
TCONS_00065959 other upstream 960611 25046139 ~ 25046208 (+) False XLOC_033712
TCONS_00065985 other downstream 2121 26028659 ~ 26028773 (+) True XLOC_033727
TCONS_00065992 other downstream 44336 26070874 ~ 26071007 (+) True XLOC_033732
TCONS_00065993 other downstream 44888 26071426 ~ 26071508 (+) True XLOC_033733
TCONS_00065996 other downstream 94093 26120631 ~ 26120736 (+) True XLOC_033735
TCONS_00066028 other downstream 861872 26888410 ~ 26892142 (+) True XLOC_033754

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_02198750_02225249.mRNA True 4050 mRNA 0.49 16 CI01000026 2198308 ~ 2225680 (+)