RNA id: XM_039808025.1


Basic Information

Item Value
RNA id XM_039808025.1
length 4268
RNA type mRNA
GC content 0.46
exon number 7
gene id b3gnt9
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 35096988 ~ 35104897 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgcacacagcatctgctctctcctcttctctcattGGACCGTTGCCTTAAACTTTGGAAACCAGTCTCTGTGTCTTGCGCTTTCAGACATCAGCACAGATGTTTTCGGTTTGACCTCCTCCTCCGTCTCGTCTGGATGCCCCCACCCATTGGTGCCTGAGGAGAAGGGGAGGATGGACACAGACGCGATGGACGTACACCCAGTGGTGTGATTTTTTACAGACAAACTGTAGGCGATATTTAGCAATGcagcagagaggaggaagaaagatCACCTCATCTCTTCATCAAACCCTGCGTCAAGCATGCCAACCCAAACCTGGTCTCCACTGCATTCCTGCTCAGTACTTAACTGAAGTCTTCAGAAGATGCTGAGGAAGATGGTGACAATGAGGAGGATCCTCCATGTGAAGGGAGATGTGATGTGCACCATGCTGCTCCTGGTGCTATTCTGTCTGCTGCTCTATGCCCGCCAGGTGGTCCTCTCCTCTGGGTGGGACAGGCCTGTCTGGAAGCTGGAAATCCATGGCTCTAACAGCTCCAGCAGGACCTTGCTGGGCGCCAGCGGGACCAAACAGATCCCATCCCGCCCTTCAGAGTCACAGCTGCCTCCCTGCAAGCCCCAATCCAAGTCCAGACCTCCTCAGCCCAAGTCCAAACCTCAGGTCAAATCTAAGGGGAAATCCAAGACGCGGCGGAAAAATGCTGTGCCGACTAAGACCGCTGGCAAGCCCCTGCCCACGATGCCACCATTTGACTTTGAGGGCTATCTGAGAGAAAAGGACAACAGGAACTTTAAGCTGCTCATAGACCAGCCAGAGAAATGTCACCTCGGAGGAGCAGAGGAAGAacaagaaagaggaagtgaaggGTCTACTACTGCTCCTTACATGCTGATTGCGGTGAAATCTATCCCTGCAGATTTTGATAAACGTCAGGTGGTACGTCGGACCTGGGGTAAAGAGGGACTCTTTAAAAACGGTGTGTCCATCCGTACCGTTTTCCTGCTGGGGGTTCCCAGGAATCGGACTGCTCTGCCTCTGTGGGATCGTCTCTTGACCTACGAGAGTCAAACCTTTAGGGATATCCTGCTCTGGGACTTTGAAGACACCTTCTTCAACCTGACGCTGAAGGAAACCCATTTTCTGAAATGGGTTAACAGCAGCTGTCCTCGCGTCAAATTCATCTTCAAGGGCGACGCCGATGTGTATGTTAATGTGGAGAACATACTAGAGATGCTACAAGGACAAAAGCCAGACACGGATCTGTTTGTCGGTGATATTATTATCCATGCTAAACCCATTCGCCGGCGCAGTTCCAAATACTACGTGCCAGAGTTTGTTTACGGAGGGGGTTTGTACCCGAATTACGCTGGGGGAGGAGGGTTTGTCATGTCGGGACATACGGCTCGCAGACTTAGCTCTGCCTGTCAACAGGTGGAGTTGTTCCCCATTGATGATGTCTTCCTGGGAATGTGCCTCCAGCTGATCGGCGTCAAACCATCACGCCACCAAGGCTTTCGGACCTTCGGAATTCCCCGGCCGTCGGCGGCCCCCCACCTTCAGACGTTCGACCCGTGTTTTTACAGGGACCTCATGGTTGTTCACAGGCTCAGTGTTGCTCAGATCTGGCTTATGTGGAACCTCCTGCACGACCCCAAACTGAGCTGCCACAACAGGACCAGCCCGACATCCTGGCCCTTTAAGTGGAAGGATAAGATGGGAGAAGAGACGGATTATGGCGAGAAGCAGGTGTTTGTCACGCATTAGTGACTCCCCACAGGGCCCAGTGGGATCTGCGAGAGCCCTAGCGAGGACATAATGGTTATTAAGCAGGATCTGTGGCCAACTTGAAGGGCTTGCGATGTGTTCAAAAGCACAGTCGAGTCatatgagacttttttttttccaagctgGCAGATCATCTCTGAGGGAAATGAATTGGCAAAGGCCTAATGTGCTTCAGATTTTTCGGTAAGGAAGCCCAGAGAGAATTTAGGGTGTAGCCATCCAagactgtctgtgtgttcatACAGTGTTCGTGAACAACCATGCAGCAAGACTTTGATTTCCAAAGAAGATAAAAAGAAGACATTTGAATGTGTAATCTTCAGAATGTattgtgttttaattgtttACACAAAGAAACCGAAAGATCTACAAGGACAACATGACAAACGACAAATGTGTTTGCTTCAGAGTTACTTTATAAGGaagttctctttttttatatatatatatataaaagcagATTTTCTTATAAAAGCAGATATGGCACACAGCACATTCAATATACATGTAGTTTTTAATTGAATTTGGCCAAAGAATATTCAACAAAATAGCGACTAATACGAGTAACCACAAGGCAACGACAGAAAAATGTCTTTCATGTACAAAGGTGAAGCACCTGACAGTGCCCATGCAGCCACAATTAATAACAACACATTCAAAATGCGACTACAAAAAGAAGTGCAATTATTCCACTGTGGATTGGTTATAATGTTTTGGATGAAATTGCTATCCCGATGTCAGAGATGCAGCGAcggtgcccttgcaaaatagacCACAGAGATGGCAGGAGGGGGGGGATGCCTGACATCCGGCGAATCTTCTACCATTAATGCAAATAATTCAGCATCTTGTATTTCGCCACTTATCTGCTCTCTAATCATATGTGCCATAATGTCTAGTATTTCATTCTGTCTCTCATGATGCGTGTTTTCTGTGcaacagttttgttttgtttttttttctcgaaaTTTGCCTAGGATCTGTAAAAGTTCAAGGAAGATTCCCTGGTTGACAGCCATATTGTTTTCTACGTCTCCTCCTCTGTGAAAGTTCCTGCTATGCAGTGTGACGCAATGACTCCACAATACACTTTCTGTTCTCTCAGGCTACTTTCAAATGTCCATCACTCAGAGCATTGCATTATTGTTGAGCTGGACTCTTTCTGAATAGTCCACTCGTTCTACGCTGTCACTGCATATTTATGCTCTGGGTGTCTCGAACGAACTTGGTACTTGTTGCAGTTGTGGTAGCCATCATGTGCAAATGCCACCTTTTCTTTGTGGTTTCCTGGATTTTGAAAGTGGCTGCATGCGAAGCAGAAAGCACCCCCTTGGAAACAGAATATTCCATCCATTTGTAATCCTCATACCATCTACGCTTGAAGTAGTGACCCTGTGGTCCGACTTTTGTAGCTGGATAATGCTGAAGAAGCTAACAGTGCAGCTAACGGTGGCTGTGGAGCAGCTAGCACCGATAGACTGCTCTGGTGCTCCCTCATATTGTGGCTCACGAGTTTCTCTCTACGACTCATCTTTCTAATCCCCCCTCTTCTCCTTGGGCCCCCTCGGAGTCTGGGTCtggatctccacagcgctgtggagtaaggtctggctacaccccAGATACATTGTAGGAtaggagaaagaaaacactctgggttgtttgcgtttctttaaaccagtcacaatcgtcttgggccgTACTAAGCTCCGGTCGCAGCGATGCAAAATGATCTCGGGAGggaacttgttctggtggaacatttgcaccccgcaaaagaaaacgccacatgcaATATTTAATGAAGTTAACGGTTCACACAtaacagtaacgtgagctatttaaatcagctggatacatggttaaacgtcatttgctcttaccagtgtatcgtgTATGtattcgtccacagcaatcccgaGAATCGGTCCCCAAACGTCCCAGTTGGAGAGGAAATGTCGTAAACATATTctgtgtaaatctttacaatcattccccgaaagaaccatgCAGGCCTGCCctattgcacaatccaaattttcttcaaaacttgccattcaTAGCGTGtggaaggttgttgttgtttcccgtagcgaagggattttgagaacggcaacacacagagagcggaaggagAGGGACAAAACCTGACAtccagatgtcaggctttatgctggaaatgtactttccgttgatccagacaaTGTGGCTGGTTCATTAACTtaaatatttctgtatttaaccctcctgttgtggtcgggtcaaatttgactcattttcaaaaagtttctatatcagaaatttgggtttcatTCGACCAAATcgtcaacaaaaaaaatatcataCCATAAAACGCTCTTCACTTTGGGTGTTTCATTAaatttttatagcatttgaagaaaaaaaatgaataaaagaacattgaaaaaaccaacaaaaacattttcaaaagcggagaaaaaaatcgacaaaaacattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121209 lncRNA downstream 36882 35002953 ~ 35060106 (-) True G90039
TU121208 lncRNA downstream 39351 35055265 ~ 35057637 (-) True G90038
TU121199 lncRNA downstream 41766 34951944 ~ 35055222 (-) True G90030
TU121196 lncRNA downstream 74781 34975333 ~ 35022207 (-) True G90028
TU121055 lncRNA downstream 358215 34737735 ~ 34738773 (-) True G89925
TU121240 lncRNA upstream 43254 35148151 ~ 35253332 (-) False G90058
TU121242 lncRNA upstream 43254 35148151 ~ 35175772 (-) True G90058
TU121243 lncRNA upstream 43254 35148151 ~ 35175772 (-) False G90058
TU121245 lncRNA upstream 47149 35152046 ~ 35178398 (-) True G90059
XR_005640104.1 lncRNA upstream 107022 35211919 ~ 35213649 (-) True LOC120564427
XM_039808018.1 mRNA downstream 348013 34730082 ~ 34748975 (-) False LOC120563671
XM_039808017.1 mRNA downstream 348013 34730082 ~ 34748975 (-) True LOC120563671
XM_039808019.1 mRNA downstream 422734 34639308 ~ 34674254 (-) True LOC120563673
XM_039808020.1 mRNA downstream 463179 34618303 ~ 34633809 (-) True LOC120563674
XM_039808021.1 mRNA downstream 466475 34618302 ~ 34630513 (-) False LOC120563674
XM_039808014.1 mRNA upstream 6367 35111264 ~ 35131137 (-) True bbs2
XM_039809152.1 mRNA upstream 49842 35154739 ~ 35155316 (-) True LOC120564297
XM_039808039.1 mRNA upstream 50416 35155313 ~ 35155827 (-) True LOC120563683
XM_039809153.1 mRNA upstream 51154 35156051 ~ 35159186 (-) True LOC120564298
XM_039809154.1 mRNA upstream 77603 35182500 ~ 35185858 (-) True LOC120564302
TU121058 other downstream 418887 34676243 ~ 34678101 (-) True G89928
XR_005639996.1 other downstream 484827 34595209 ~ 34612161 (-) True psme3ip1
TU120958 other downstream 710956 34385441 ~ 34386032 (-) False LOC120563661
TU120974 other downstream 764992 34331180 ~ 34331996 (-) True G89870
TU120978 other downstream 781845 34314531 ~ 34315143 (-) True G89873
TU121230 other upstream 39492 35144389 ~ 35171683 (-) True G90055
TU121363 other upstream 762116 35867013 ~ 35867311 (-) True G90150
TU121644 other upstream 1408065 36512962 ~ 36514908 (-) True G90380
TU121645 other upstream 1413343 36518240 ~ 36520778 (-) True LOC120564801
TU121849 other upstream 2705457 37810354 ~ 37815552 (-) True hsbp1b

Expression Profile