RNA id: XM_039809153.1



Basic Information


Item Value
RNA id XM_039809153.1
length 1095
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC120564298
representative True

Chromosome Information


Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 35156051 ~ 35159186 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ACATCAGCCACCACCATGAGTACGGACTCAGAGATGGCCATTTATGGCAAAGCTGCCATTTACCTTCGGAAGCCAGAAAGGGAGAGAATTGAGGCTCAAAGTGCACCATTTGATGCCACGACTGCCTGCTACGTGGCCGATAAGCAAGAACTGTACTTGAAGGCAAAAATCCTCAAGAAAGAAGGTGACAAAGTCACCGTCGAAATCCTGACCACTAATGAGGTTGGTATCATGAAGACAGTTAAAGAAGCTGACATCTATCCAATGAACcctccagtgaaacactgcccTCCCAAGTATGACAAGATTGAGGACATGGCCATGATGACCCATCTCAATGAAGCATCTGTGCTGTATAACCTCAAAGAGCGTTATGCAGCATGGATGATCTACACCTACTCTGGGTTGTTCTGTGCCACTGTGAACCCCTACAAGTGGCTCCCAGTCATCACAACCAACCCCTACGACTTCCCCATGTGTAGCATGGGTCAGATCACTGTGGCCAGCATTGATGACAAAGTTGAGCTGGAAGCCACTGATAACGCCATTGATATCCTGGGCTTCATTAATGAAGAGAAGGTGATGAACTCCGTGACTGCCCTGGCCAAGGCTATCTATGAGAGGATGTTCTTGTGGATGGTCGTTCGTATTAACCAGATGTTGGACACTAAACAAGCAAGACAGTTCTACATTGGTGTCCTGGATATTGCTGGTTTTGAAATCTTTGACTTCAACACCTTGGAACAGCTGTGCATCAACTTCACCAATGAGAAACTGCAACAGTTCTTCAACCACACCATGTTTGTCCTGGAGCAAGAGGAGTACAAGAAGGAGGGTATTGTCTGGGAGTTCATTGACTTTGGCATGGACTTGGCTGCCTGCATTGAGCTCATTAAAAAGCCCATGGGAATCTTCTCCATCCTTGAAGAGGAGTGCATGTTCCCCAAGGCCTCAGACACATCCTTCAAGAACAAGCTGTATGACCAGCATCTTGGCAAATCTAAAGCATTTGAGAAGCCTAAGCCCGCCAAAGGCAAGGCTGAGGCCCACTTCTCCCTGGTGCACTATGCtggtaacctgactccgccagatgga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU121209 lncRNA downstream 95945 35002953 ~ 35060106 (-) True G90039
TU121208 lncRNA downstream 98414 35055265 ~ 35057637 (-) True G90038
TU121199 lncRNA downstream 100829 34951944 ~ 35055222 (-) True G90030
TU121196 lncRNA downstream 133844 34975333 ~ 35022207 (-) True G90028
TU121055 lncRNA downstream 417278 34737735 ~ 34738773 (-) True G89925
XR_005640104.1 lncRNA upstream 52733 35211919 ~ 35213649 (-) True LOC120564427
TU121296 lncRNA upstream 135541 35294727 ~ 35295515 (-) True G90097
XR_005640069.1 lncRNA upstream 210728 35369914 ~ 35371961 (-) True LOC120564191
TU121315 lncRNA upstream 350701 35509887 ~ 35511768 (-) True G90112
TU121325 lncRNA upstream 406806 35565992 ~ 35586502 (-) True G90116
XM_039808039.1 mRNA downstream 224 35155313 ~ 35155827 (-) True LOC120563683
XM_039809152.1 mRNA downstream 735 35154739 ~ 35155316 (-) True LOC120564297
XM_039808014.1 mRNA downstream 24914 35111264 ~ 35131137 (-) True bbs2
XM_039808025.1 mRNA downstream 51154 35096988 ~ 35104897 (-) False b3gnt9
XM_039809154.1 mRNA upstream 23314 35182500 ~ 35185858 (-) True LOC120564302
XM_039809370.1 mRNA upstream 55981 35215167 ~ 35217522 (-) True LOC120564426
XM_039809366.1 mRNA upstream 80105 35239291 ~ 35274548 (-) False cnot1
XM_039809357.1 mRNA upstream 80105 35239291 ~ 35274548 (-) False cnot1
XM_039809358.1 mRNA upstream 80105 35239291 ~ 35274548 (-) False cnot1
TU121058 other downstream 477950 34676243 ~ 34678101 (-) True G89928
XR_005639996.1 other downstream 543890 34595209 ~ 34612161 (-) True psme3ip1
TU120958 other downstream 770019 34385441 ~ 34386032 (-) False LOC120563661
TU120974 other downstream 824055 34331180 ~ 34331996 (-) True G89870
TU120978 other downstream 840908 34314531 ~ 34315143 (-) True G89873
TU121363 other upstream 707827 35867013 ~ 35867311 (-) True G90150
TU121644 other upstream 1353776 36512962 ~ 36514908 (-) True G90380
TU121645 other upstream 1359054 36518240 ~ 36520778 (-) True LOC120564801
TU121849 other upstream 2651168 37810354 ~ 37815552 (-) True hsbp1b
TU122135 other upstream 3285789 38444975 ~ 38449275 (-) False ada2a

Expression Profile