RNA id: XM_039809356.1


Basic Information

Item Value
RNA id XM_039809356.1
length 8453
RNA type mRNA
GC content 0.51
exon number 50
gene id cnot1
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 35239291 ~ 35274548 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAACGTGAGCGCGCAGCCGCCGTGGTGACAGTcgccattttattttgaaaatcaaacTGAACTGGAGCACACAGCGACTCTTCCATCTCGTCAAGTTTGTTGTGTGCGAAACAAGAAGGGATGAACATCTGAATTACTTTCTTGGGAGCACGATGCTGAACTCTATTTTAAACTGAAGGACTCTACCTAACACCGGGAGCTACTGACTTTGGAagcaaatattttttacatcttttttggggggggggggagcagaAGTAACCTATCACTGAAGTGACTAAAGGGGAATAATGGTGATTTTGCGCCGTGCTCGGCCGCCTGCTTCCGCCCCAACCAGCAATGAATCTTGATTCGCTCTCGCTGGCTTTGTCTCAAATCAGCTATCTGGTGGACAATTTAACAAAGAAAAACTACCGAGCCAGCCAGCAAGAAATACAGCATATTGTAAATCGTCACGGTCCTGAGGCAGACAGGCATCTACTACGCTGTCTCTTCTCTCATGTGGATTTCAGTGGCGATGGTAAAAGCAGTGGCAAGGACTTTCACCAGACACAGTTTCTGATTCAGGAGTGTGTGTCGCTGATATCAAAGCCAAACTTTATCGCTACTCTGTGTTACGCCGTTGACAATCCCCTGCACTACCAGAAGAGTTTGAAGCCATCGGCCCACTTATTCACTCAACTGAGTAAAGTTCTTAAGCTCAGCAAGGTCCAAGAGGTGATATTTGGACTTGCTTTGCTCAACTCCAGTAACGCAGACCTTCGTGGTTTTGCTGCGCAGTTCATCAAGCAGAAACTTCCAGACCTCCTGCGGTCATACGTTGACGCAGATCTCGGAGGAAATCAGGAAGGTGGCTTCCAAGATATTGCCATAGAGGTCTTGCAATTACTGCTCTCCCATCTACTGTTTGGCCAGAAGGGAGCCAGTGGGGTAGGCCAAGAGCAGATTGACGCCTTCCTCAAGACACTTTGCCGAGATTTCCCCCAGGAGCGCTGCCCTGTGGTGCTCGCACCACTGCTGTACCCTGAAAAACGGGACATTCTCATGGACAGGATCCTGCCAGACTCGGGGGAGTTAGCTAAGACCATGATGGAGAGTTCTCTTGCAGAATTCATGCAAGAAGTTGGCTATGGCTTCTGTGCTAGTCTTGATGAATGCAGAAACATAATCCTTCAGTATGGGGTGAGGGAGGTCACTGCCAGCCAGGTAGCCAGGGTCCTGGGCATGATGGCTCGCACCCACTCTGGCTTAACTGATGGCATCCCACTACAGTCCATCTCTGCTCCAGGAAGTGGTATCTGGAGCGATAGTAAGGATAAGAACGATGGCTCCCAAGCACACACGTGGAATGTTGAAGTTCTCATCGATGTCGTGAAAGAAGTGAATCCCAACCTGAACTTCAAAGAGGTGACATACGAATTGGACCACCCAGGCTTTCTAATCCGGGACAGTAAAGGCCTGCATATAGTGGTGTATGGCATTCAGAGGGGGTTGGGCATGGAGGTCTTTCCTGTCGATCTCATCTATAGGCCATGGAAACACGCCGAGGGACAGctgtcattcaTTCAGCACTCCCTCATGAGCCCAGAAGTGTTTTCCTTTGCTGACTACCCTTGCCACACTGTGGCCATAGACATCCTTAAGGCCCCACCAGAGGATGACAACAGGGAGATTGCCACCTGGAAAAGTCTGGACCTGGTGGAGAGCCTGCTTAGGCTGTCTGAGGTGGGCCAGTATGAGCAGGTGAAGCAGCtgttcagctttcctatcaagcACTGCCCAGACATGTTGGTGCTGGCACTGCTGCAGATCTCCACCTCCTGGCACACACTGCGACATGAGCTCATCTCTACCCTGATGCCTATCTTCCTGGGCAACCACCCTAACTCTGCCATTATCCTGCACTACGCCTGGCATGGACAGGGACAGTCTCCCTCCATCCGTCAGCTAATTATGCATTCGATGGCTGAGTGGTACATGAGAGGGGAGCAGTACGACCAGGCCAAGCTGTCTCGCATCCTGGACGTGGCCCAGGACTTGAAGtctcTATCGATGTTGCTGAATGGTACTCCATTTGCCTTTGTAATTGACCTTGCTGCACTTGCCTCTCGCCGTGAATACCTCAAACTTGATAAATGgctgactgacaaaatcagagAGCATGGGgAACCTTTTATCCAGGCGTGTGTGACATTCCTGAAGAGGCGCTGCCCATCCATTATGGGGGGTCTGGCCCCAGACAAGGACCAGCCCAAAAGCGCCCAGCTGCCCCCGGAGACCTTAGCCACCATGctggcctgcctgcagtccTGTGCTGGgaGCGTGTCCCAGGAGCTGTCAGAGACTATCCTTACCATGGTTGCTAACTGCAGCAATGTAATGAATAAAGCCCGACAACCACCACCAGGGGTGATGCCAAAGGGACGTGCTCCCAGCACCAGCAGCCTGGATGCCATCTCTCCTGTACAGATGGACTCTCTGTCTGGCATGGGTTCCTTGAACCTGGGGGGCACAGCCACCTCCCACACTCAAAGCATGCAAGGTTTCCCAACCTCGCTGAGTTCGGCTTTCAGTAATCCTCAGTCCCCAGCAAAGGCCTTCCCACCACTCTCCAACCCCAACCCCAGCACACCATTTGGTGGCATTGGCAGCCTGTCCTCGCAGCTCCCTGGTATGGACTCTGGTCCTTTGGGCACAGGCATCGGCTCTGGTATTGGTTCTAGTCTGGGGATGCCAACGGTAAACACTGACCCTTTTGGCACCAGGAAGATGAGCACACCAGGCCTGAACCCACCTACCTTTCAGCAGACTGACCTTTCTCAGGTCTGGCCCGAGGCAAACCAGCACTTTAGTAAGGAGATAGACGACGAAGCAAACAGTTATTTTCAGCGCATCTACAACCATCCACCTCATCCAACTATGTCTGTGGATGAGGTACTGGAAATGCTGCAGAGATTCAAGGATTCAACCATCAAGCGGGAGCGGGAGGTGTTCAATTGCATGCTTCGGAACTTGTTTGAGGAATACCGATTCTTCCCCCAATACCCAGACAAGGAGCTGCACATCACTGCCTGCCTTTTTGGTGGCATTATTGAGAAGGGTCTTGTCACCTACATGGCCCTCGGCTTGGCCCTCAGATATGTTCTTGAAGCCTTAAGAAAACCCTATGGATCCAAAATGTATTACTTTGGAATTGCCGCCCTAGATAGGTTTAAAAACAGACTAAAGGACTATCCTCAATATTGTCAACACCTGGCTTCAATTGCCCACTTCTTGCAATTCCCCCACCATTTACAAGAGTGTGTGCAGTATATCGAGTATGGCCAACAGTCACGGGACCCTCCGGTGAAGATGCAAGGCTCCATCACCACCCCCGGCAGTCTGGCACTGGCACAAGTCCAAGCACAGGCTCAGTCGCAGCAACCTGGTGTCCCCAAAGCCCCACAGCCAGGTCAGCCCAGCACTCTAGTCACCACAGCCACGACTACAACCACGGTAGCCAAGACCCCTACCATCACCAGACCAACACCCAGCACCTTCAAGAAGGATGTGCCCCCCTCCATAAACACAACCAACATTGACACCCTGCTGGTGGCCACTGACCAAACAGAAAGGATCGTAGAGCCTCCAGAGAATGTCCAGGAGAAGATTGCGTTTATCTTCAACAACCTTTCTCAGTCCAACATGACACAGAAGgttGAGGAGTTGAAAGAAACTGTGAAGGAAGAGTTTATGCCATGGGTGTCTCAGTACCTGGTGATGAAGCGTGTCAGCATTGAGCCCAACTTCCACGGTCTCTACTCCAACTTTCTGGACACTCTCAAGAACCCTGAGTTTGTGAAGATGGTCCTCAATGAGACATACAGGAATATCAAGGTTCTGTTGACTTCTGACAAGGCAGCTGCCAATTTCTCTGATCGCTCCCTGCTGAAGAACCTGGGCCACTGGTTGGGCATGATTACACTGGCCAAAAACAAGCCTATTCTTTACACAGATCTGGAAGTAAAGTCTCTGCTACTGGAAGCCTATGTGAAAGGCCAGCAGGAGCTACTGTACGTGGTTCCCTTTGTGGCCAAAGTTTTGGAGTCCAGTCTACGAAGCATGGTCTTCAGGCCCCAGAACCCCTGGACCATGGCCATCATGAATGTTCTTGCTGAGCTGCATCAAGAACATGATCTCAAGCTGAACTTAAAGTTTGAGATTGAAGTTCTGTGTAAGAACTTGTCTTTGGACATCAACGATCTCAAGCCAGGAAACTTGCTGAAGGACAAAGATAAGCTGAAGAGCCTGGAGGAACAGCTGTCTGCGCCAAAGAAGGAGGCAAAGCCTCCAGAGGAGATGCTGCCAGTGTCTACCACAGGAGACTTTGTTCCATTCGCAGCCCCTCCCTCAACCCCagctaccaccaccaccacttgCACAACCACAGGGCCCCCCACCCCACAGTTCAGTTACCACGACATCAATGTGTATGCCCTGGCAGGTCTGGCTCCACACATCAATATAACTGTCAACATCCCTCTGCTACAGGCCCATCCCCAGTTGAAGCAGTGTGTACGGCAGTCAGTCGAGCGAGCTGTTCAGGAGCTGGTGCACCCTGTGGTTGACCGCTCTATCAAAATAGCCATGACAACCTGTGAGCAGATCATCAGGAAGGACTTTGCCCTGGATTCAGAGGAGTCCCGCATGCGTGTGGCTGCCCACCACATGATGAGAAACCTGACTGCTGGCATGGCCATGATCACCTGCCGGGAGCCCCTTCTCATGAGCATCGCCACCAACCTTAAGAACAGCTTTGCTGCTGCACTAAGGGCCCCAACCCCCCAACAGAGGGAAATGATGGAAGAGGCTGCAGCCAGGATTGCTCAAGACAACTGTGAATTGGCTTGCTGCTTCATTCAGAAAACAGCCGTGGAGAAGGCTGGCCCTGAAATGGACAAGAGACTAGCCACGGAGTTTGAACTGAGGAAGCATGCACGGCAAGAGGGACGTCGTTATTGTGATCCTGTTGTTCTGACGTACCAGGCTGAGCGTATGCCTGAGCAGATCAGACTCAAGGTGGGAGGAGTGGACCCGAAGCAACTGGCTGTATATGAGGAGTTTGCCAGGAATGTTCCAGGTTTCTTACCCAGCAATGATCTCTCTCAACCCACTGGCTTCTTGGCTCAGCCCATGAAGCAACAGGCATGGGCCACAGATGATGTGGCTCAGATCTACGATAAGTGCATGGCAGACTTGGAGCAGCATCTTCATGCCATCCCTCCAGCCCTCGCCATGAACCCGCTGACCCAGGCTCTGCGCAGCCTGCTGGAAGCTGTGGCCTTGGCTAGGAACTCCAGGGACGGCATCGCCGCACTTGGCCTTCTACAGAAGGCTGTGGAAGGTCTTCTGGATGCTACTAGTGGTGCTGATGCAGACCTGCTGCTCCGCTACAGGGAGTGCCACCTGCTGGTGCTGAAAGCCCTACAGGATGGACGGGCCTATGGGCCACAGTGGTGCAATAAGCAGATCACCAGGTGTCTGATTGAATGCCGTGATGAGTACAAATATAACGTAGAGGCAGTGGAGCTTCTGATCAGGAACCATCTCGTGAATATGCAGCAGTATGACCTGCACCTGGCACAGTCAATGGAAAACGGACTGCACTACATGGCTGTTGCATTTGCCATGCAATTGGTGAAGCTCCTTCTGGTGGATGAACGCAGTGTCAGCCATGTCACAGAGGCTGACCTCTTCCACACAATTGAAACTTTAATGAGGACCTGTGCACACTCCAGAGCCAACGCACCTGAGGGACATACAGCAGAACAAGAACAGCAAAGCTTAACAAAGACACCAAATGAGACAGTGGGGTGTACAACAActtgCCTTCCCCAGCTGATGGATGTTGTTCGCTCCAACTATGAGGCCATGATTGACCGGGCCCACGGAGGACCCAACTTCATGATGCACTCTGGGATTTCACAGGCTTCAGAATATGATGATCCCCCAGGCCTGAGGGAGAAGGCCGAGTACCTCCTGAGGGAATGGGTCAACCTGTACCACTCAGCTGCTGCTGGCAGGGATAGCACCAAAGCTTTTTCTGCCTTCGTTGGCCAGATGCACCAGCAGGGCATCCTGAAGACCGATGACCTGATCACCAGGTTCTTCCGGCTGTGCACAGAAATGTGTGTGGAGATAAGCTATCGGGCACAGGCTGAGCAGCAGCACAACCCAGCAGCCAGTGCAGCCATCATCAGAGCCAAGTGTTACCACAACCTGGATGCTTTTGTTAGGCTCATAGCCCTGCTTGTCAAACACTCTGGAGAGGCCACCAACACAGTGACAAAGATCAACCTCCTCAACAAGGTTCTGGGTATCGTAGTTGGGGTGCTGATTCAGGACCACGATGTCCGTCAGACAGAATTCCAACAGCTGCCATACCACCGCATTTTCATCATGCTGTTGTTGGAGCTCAACGCTCCTGAACATGTTTTGGAGACCATCAACTTCCAGACACTCACCGCCTTCTGCAACACCTTCCACATCCTGAGACCCACCAAAGCACCCGGCTTTGTGTACGCCTGGCTGGAACTGATCTCCCATCGTATCTTCATCGCCAGGATGCTAGCGCACACACCGCAGCAGAAGGGTTGGCCCATGTATGCACAGCTGCTGATTGATCTCTTCAAGTACCTGGCCCCATTCTTGAGGAATGTAGAGCTCAACAAACCTATGCAAATCCTCTACAAGGGCACACTGCGAGTGCTCCTGGTTCTGCTGCATGACTTCCCAGAGTTCCTGTGTGACTACCATTACGGCTTCTGTGATGTTATCCCACCCAACTGCATCCAGCTTCGCAACCTCATCCTCAGTGCCTTTCCACGCAACATGAGGCTCCCTGACCCTTTCACACCCAATCTCAAgGTGGACATGCTGAGTGAGATCAACATCGCGCCCCGTATCCTCACCAACTTTACAGGCGTTATGCCTTCCCAGTTCAAGAAGGACCTGGACTCATACCTGAAGACTCGGTCACCAGTCACCTTCTTGTCTGAGCTGCGCAGCAACCTGCAGGTGTCCAACGAGCCAGGAAACCGCTACAACATCCAGCTGATCAACGCTCTGGTGTTGTATGTCGGCACACAGGCGATCGCTCACATCCACAACAAAGGCAGCACCCCCTCCATGAGCACGATCACCCACTCTGCACACATGGACATCTTCCAGAACCTGGCCGTGGACCTGGACACTGAGGgTCGTTACCTGTTCTTGAACGCCATCGCCAATCAGCTGCGCTACCCCAACAGCCACACTCATTACTTCAGCTGCACCATGCTCTATCTGTTTGCGGAGGCCAACACCGAGGCCATCCAGGAGCAGATCACCAGGGTTCTGTTGGAGAGGCTGATAGTGAACAGGCCTCACCCATGGGGTCTCCTCATCACCTTCATCGAGCTGATCAAGAACCCTGCCTTCAAGTTCTGGAGCCACGACTTTGTGCACTGTGCCCCTGAGATTGAAAAgCTGTTCCAGTCTGTAGCCCAGTGCTGCATGGGACAGAAGCAGGCCCAGCAGGTGATGGAGGGCACTGGTGCCAGCTAGCCTGTGTACCAGCCAGCTCGTAGCCCTCGGGAGAGATGCCGCAGCCTTGACCACCTCCcccaccatacacacacacctctcttaACTGTTGGCACTGGATAAACTGGCAACCACAGTCATTTGAAATGTGGATGGAATGACTACTGCTCACGGATCTAAagagttagattttttttttggtttatcCCTTTGGGGGCTGAATTGAGATGGAGAGAATGGATTGGGACATGTTGTTTGATATACTTTTTTTGATGCTTTGATGTAAATATTGGAAAAAAGGGAGAACGGGAGAGTAGATGTGTGGAGAGCAATGCACATGTCAAAATGTATCCTGACATGTAAAGACATCCAAACATATTTCCACTCACTACCAAAGTTCTTGGTTTGCTTCCCTCCCACACAAATccctttttctgccttttttttttttgctttcagaGGCTGAATGGtagattgaagaaaaaaaaaagctgcctgCTATTTTCATTTGATTCCTTTTTATCCCTGAGTGGGACAGGAAGATGAAGTTTAGTCTCCCAggtggggtgtgggggggtCTACTCCTGGTGTGTCGGTGGAGACAGTTTGCTGATGGTTTGTCCATTTGAAACTGGCTCTGGAAGTCTCTCCCTGGCACTTGTAAATTGTGCAAAGTGATGGCGACATCGTATCTTGACGATTTGTACAAAGATCCAAATTGAAGAACAACAATAGAAGGACCAATACAGCccattttgtaacattttgaatgttttgtaaatgtattggtccatgtgttgtattttgtagtCCTTTCTAGTTTGCCTTTAGTTCTTGCTACTTAACTGCAGTATGCATACATACAGGAAATAAAGCATTCAAACTGCAA

Function

GO: NA

KEGG:

id description
K12604 CNOT1, NOT1; CCR4-NOT transcription complex subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640104.1 lncRNA downstream 25642 35211919 ~ 35213649 (-) True LOC120564427
TU121245 lncRNA downstream 60893 35152046 ~ 35178398 (-) True G90059
TU121242 lncRNA downstream 63519 35148151 ~ 35175772 (-) True G90058
TU121243 lncRNA downstream 63519 35148151 ~ 35175772 (-) False G90058
TU121209 lncRNA downstream 179185 35002953 ~ 35060106 (-) True G90039
TU121296 lncRNA upstream 20179 35294727 ~ 35295515 (-) True G90097
XR_005640069.1 lncRNA upstream 95366 35369914 ~ 35371961 (-) True LOC120564191
TU121315 lncRNA upstream 235339 35509887 ~ 35511768 (-) True G90112
TU121325 lncRNA upstream 291444 35565992 ~ 35586502 (-) True G90116
TU121350 lncRNA upstream 495362 35769910 ~ 35770175 (-) True G90137
XM_039809370.1 mRNA downstream 21769 35215167 ~ 35217522 (-) True LOC120564426
XM_039809154.1 mRNA downstream 53433 35182500 ~ 35185858 (-) True LOC120564302
XM_039809153.1 mRNA downstream 80105 35156051 ~ 35159186 (-) True LOC120564298
XM_039808039.1 mRNA downstream 83464 35155313 ~ 35155827 (-) True LOC120563683
XM_039809152.1 mRNA downstream 83975 35154739 ~ 35155316 (-) True LOC120564297
XM_039808545.1 mRNA upstream 846840 36121388 ~ 36159736 (-) True lonp2
XM_039809072.1 mRNA upstream 886442 36160990 ~ 36218694 (-) True il34
XM_039809073.1 mRNA upstream 886442 36160990 ~ 36218218 (-) False il34
XM_039808894.1 mRNA upstream 1004921 36279469 ~ 36310720 (-) True sf3b3
XM_039808453.1 mRNA upstream 1119889 36394437 ~ 36429109 (-) True LOC120563930
TU121230 other downstream 67608 35144389 ~ 35171683 (-) True G90055
TU121058 other downstream 561190 34676243 ~ 34678101 (-) True G89928
XR_005639996.1 other downstream 627130 34595209 ~ 34612161 (-) True psme3ip1
TU120958 other downstream 853259 34385441 ~ 34386032 (-) False LOC120563661
TU120974 other downstream 907295 34331180 ~ 34331996 (-) True G89870
TU121363 other upstream 592465 35867013 ~ 35867311 (-) True G90150
TU121644 other upstream 1238414 36512962 ~ 36514908 (-) True G90380
TU121645 other upstream 1243692 36518240 ~ 36520778 (-) True LOC120564801
TU121849 other upstream 2535806 37810354 ~ 37815552 (-) True hsbp1b
TU122135 other upstream 3170427 38444975 ~ 38449275 (-) False ada2a