RNA id: unassigned_transcript_445


Basic Information

Item Value
RNA id unassigned_transcript_445
length 73
RNA type tRNA
GC content 0.52
exon number 1
gene id trnaf-gaa_59
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 6598998 ~ 6599070 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gccgaaatagctcagttgggagagcgttagactgaagatctaaaggtccctggtttgatcccgggtttcggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640368.1 lncRNA upstream 44169 6554161 ~ 6554829 (+) True LOC120566291
TU139519 lncRNA upstream 91831 6506866 ~ 6507167 (+) True G103742
TU139516 lncRNA upstream 116083 6482596 ~ 6482915 (+) True G103739
TU139511 lncRNA upstream 229808 6368865 ~ 6369190 (+) True G103734
TU139376 lncRNA upstream 678458 5917239 ~ 5920540 (+) True G103631
TU139521 lncRNA downstream 55902 6654972 ~ 6655228 (+) True G103744
TU139530 lncRNA downstream 114883 6713953 ~ 6714209 (+) True G103752
TU139531 lncRNA downstream 122180 6721250 ~ 6721597 (+) True G103753
TU139570 lncRNA downstream 516211 7115281 ~ 7115562 (+) True G103788
TU139578 lncRNA downstream 630405 7229475 ~ 7229888 (+) True G103796
XM_039814343.1 mRNA upstream 42674 6554852 ~ 6556324 (+) True LOC120567386
XM_039814342.1 mRNA upstream 46391 6547927 ~ 6552607 (+) True LOC120567385
XM_039813595.1 mRNA upstream 408434 6178291 ~ 6190564 (+) False irf2
XM_039813594.1 mRNA upstream 408435 6177998 ~ 6190563 (+) True irf2
XM_039813663.1 mRNA upstream 430466 6156479 ~ 6168532 (+) True LOC120566943
XM_039814362.1 mRNA downstream 1522500 8121570 ~ 8122651 (+) True LOC120567399
XM_039814314.1 mRNA downstream 1536254 8135324 ~ 8138663 (+) True LOC120567357
XM_039814326.1 mRNA downstream 1740667 8339737 ~ 8346534 (+) False LOC120567362
XM_039814325.1 mRNA downstream 1744702 8343772 ~ 8346534 (+) False LOC120567362
XM_039814363.1 mRNA downstream 1875546 8474616 ~ 8476449 (+) True LOC120567404
unassigned_transcript_444 other upstream 1489 6597437 ~ 6597509 (+) True trnaf-gaa_58
unassigned_transcript_443 other upstream 4308 6594618 ~ 6594690 (+) True trnaf-gaa_57
unassigned_transcript_442 other upstream 5006 6593920 ~ 6593992 (+) True trnaf-gaa_56
unassigned_transcript_441 other upstream 5529 6593397 ~ 6593469 (+) True trnaf-gaa_55
unassigned_transcript_440 other upstream 8352 6590574 ~ 6590646 (+) True trnaf-gaa_54
unassigned_transcript_446 other downstream 1150 6600220 ~ 6600292 (+) True trnaf-gaa_60
unassigned_transcript_447 other downstream 3580 6602650 ~ 6602811 (+) True trnad-guc_3
unassigned_transcript_448 other downstream 6624 6605694 ~ 6605766 (+) True trnaf-gaa_61
unassigned_transcript_449 other downstream 9064 6608134 ~ 6608206 (+) True trnaf-gaa_62
unassigned_transcript_450 other downstream 9583 6608653 ~ 6608725 (+) True trnaf-gaa_63