RNA id: unassigned_transcript_448


Basic Information

Item Value
RNA id unassigned_transcript_448
length 73
RNA type tRNA
GC content 0.51
exon number 1
gene id trnaf-gaa_61
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 6605694 ~ 6605766 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gccgaaatagctcagttgggagagcattagactgaagatctaaaggtccctggttcgatcccggttttcggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640368.1 lncRNA upstream 50865 6554161 ~ 6554829 (+) True LOC120566291
TU139519 lncRNA upstream 98527 6506866 ~ 6507167 (+) True G103742
TU139516 lncRNA upstream 122779 6482596 ~ 6482915 (+) True G103739
TU139511 lncRNA upstream 236504 6368865 ~ 6369190 (+) True G103734
TU139376 lncRNA upstream 685154 5917239 ~ 5920540 (+) True G103631
TU139521 lncRNA downstream 49206 6654972 ~ 6655228 (+) True G103744
TU139530 lncRNA downstream 108187 6713953 ~ 6714209 (+) True G103752
TU139531 lncRNA downstream 115484 6721250 ~ 6721597 (+) True G103753
TU139570 lncRNA downstream 509515 7115281 ~ 7115562 (+) True G103788
TU139578 lncRNA downstream 623709 7229475 ~ 7229888 (+) True G103796
XM_039814343.1 mRNA upstream 49370 6554852 ~ 6556324 (+) True LOC120567386
XM_039814342.1 mRNA upstream 53087 6547927 ~ 6552607 (+) True LOC120567385
XM_039813595.1 mRNA upstream 415130 6178291 ~ 6190564 (+) False irf2
XM_039813594.1 mRNA upstream 415131 6177998 ~ 6190563 (+) True irf2
XM_039813663.1 mRNA upstream 437162 6156479 ~ 6168532 (+) True LOC120566943
XM_039814362.1 mRNA downstream 1515804 8121570 ~ 8122651 (+) True LOC120567399
XM_039814314.1 mRNA downstream 1529558 8135324 ~ 8138663 (+) True LOC120567357
XM_039814326.1 mRNA downstream 1733971 8339737 ~ 8346534 (+) False LOC120567362
XM_039814325.1 mRNA downstream 1738006 8343772 ~ 8346534 (+) False LOC120567362
XM_039814363.1 mRNA downstream 1868850 8474616 ~ 8476449 (+) True LOC120567404
unassigned_transcript_447 other upstream 2883 6602650 ~ 6602811 (+) True trnad-guc_3
unassigned_transcript_446 other upstream 5402 6600220 ~ 6600292 (+) True trnaf-gaa_60
unassigned_transcript_445 other upstream 6624 6598998 ~ 6599070 (+) True trnaf-gaa_59
unassigned_transcript_444 other upstream 8185 6597437 ~ 6597509 (+) True trnaf-gaa_58
unassigned_transcript_443 other upstream 11004 6594618 ~ 6594690 (+) True trnaf-gaa_57
unassigned_transcript_449 other downstream 2368 6608134 ~ 6608206 (+) True trnaf-gaa_62
unassigned_transcript_450 other downstream 2887 6608653 ~ 6608725 (+) True trnaf-gaa_63
unassigned_transcript_451 other downstream 4271 6610037 ~ 6610204 (+) True trnad-guc_4
unassigned_transcript_452 other downstream 10811 6616577 ~ 6616649 (+) True trnaf-gaa_64
unassigned_transcript_453 other downstream 12412 6618178 ~ 6618250 (+) True trnaf-gaa_65