RNA id: TCONS_00067316


Basic Information

Item Value
RNA id TCONS_00067316
length 588
RNA type processed_transcript
GC content 0.43
exon number 2
gene id XLOC_034570
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 14393059 ~ 14446512 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTAAGAGCAAAGATGGGGCcgaggatcaccagtttgccaacaaatacGTCTGAATTGTGACAGTCTGCTTTTAGCTGGAGCTCAGAACAGAGTGGCTGAAGATGTAAAGCCTATCATTGACGCAGAGAGAGTTCAGAAGTCAAGAGAAGAGATGCGAGAGCTGGTAAATGCTCCTTTACCGGCCACATGGAGGCGCTCTTCACTCCCCACAGAGGACCAGTACACCATGGAGGAGCTCCGTCAAAGAGCAGCCTGTGAACTCCCCAATAACCGAATCGTTCAGCCCGGTATGAATTCCACACACTGGAGTGGGTCAACATCACTTCCCGTAACGCGACCGCGGAGAGAACCGAGGAGATCCAGCCTCAACACAGCACCACTTTATTCCAGTTCAGCAATAATAGATGTCCGGAGAAATCCAGTATAGAATAGGACTTTGTACATTTCCAGTAATTAACTATTTTCAGAGTATATtttattctgatttttttttttattaagaattaTCTTGAACACAatttttagcaaatgtaaatggctttttatttcatacatgatggaaattaaaaaaaataagttgccTTGA

Function

GO:

id name namespace
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0007018 microtubule-based movement biological_process
GO:0045879 negative regulation of smoothened signaling pathway biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0042995 cell projection cellular_component
GO:0035301 Hedgehog signaling complex cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
ko04340 Hedgehog signaling pathway
ko05200 Pathways in cancer
ko05217 Basal cell carcinoma
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-050307-1 Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Acts upstream of or within determination of left/right symmetry; negative regulation of smoothened signaling pathway; and photoreceptor cell outer segment organization. Located in cilium and cytoplasm. Part of Hedgehog signaling complex. Is expressed in myotome; neural tube; otic vesicle; and somite. Human ortholog(s) of this gene implicated in acrocallosal syndrome; cleft lip; and hydrolethalus syndrome 2. Orthologous to human KIF7 (kinesin family member 7).

Ensembl:

ensembl_id ENSDART00000166519

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067313 lncRNA downstream 12521 14353514 ~ 14381994 (-) False XLOC_034569
TCONS_00068669 lncRNA downstream 12997 14353922 ~ 14381518 (-) False XLOC_034569
TCONS_00069160 lncRNA downstream 13181 14353514 ~ 14381334 (-) False XLOC_034569
TCONS_00069159 lncRNA downstream 13193 14353514 ~ 14381322 (-) False XLOC_034569
TCONS_00069158 lncRNA downstream 13327 14353514 ~ 14381188 (-) False XLOC_034569
TCONS_00069161 lncRNA upstream 195710 14591067 ~ 14632839 (-) True XLOC_034573
TCONS_00069162 lncRNA upstream 600488 14995845 ~ 15084371 (-) False XLOC_034574
TCONS_00069163 lncRNA upstream 600488 14995845 ~ 15084417 (-) False XLOC_034574
TCONS_00067320 lncRNA upstream 600492 14995849 ~ 15084375 (-) False XLOC_034574
TCONS_00067321 lncRNA upstream 600599 14995956 ~ 15084340 (-) True XLOC_034574
TCONS_00067311 mRNA downstream 488106 13896769 ~ 13906409 (-) True XLOC_034566
TCONS_00067310 mRNA downstream 509905 13868198 ~ 13884610 (-) True XLOC_034564
TCONS_00067309 mRNA downstream 511527 13867722 ~ 13882988 (-) False XLOC_034564
TCONS_00067308 mRNA downstream 644407 13748687 ~ 13750108 (-) True XLOC_034563
TCONS_00067307 mRNA downstream 745852 13625929 ~ 13648663 (-) True XLOC_034562
TCONS_00067318 mRNA upstream 116643 14512000 ~ 14535862 (-) False XLOC_034572
TCONS_00067319 mRNA upstream 116878 14512235 ~ 14535862 (-) True XLOC_034572
TCONS_00067322 mRNA upstream 691836 15087193 ~ 15185811 (-) False XLOC_034575
TCONS_00067323 mRNA upstream 691836 15087193 ~ 15252540 (-) False XLOC_034575
TCONS_00067324 mRNA upstream 712168 15107525 ~ 15118140 (-) False XLOC_034575
TCONS_00067314 other downstream 14884 14379544 ~ 14379631 (-) True XLOC_034569
TCONS_00067312 other downstream 299604 14094794 ~ 14094911 (-) True XLOC_034567
TCONS_00067306 other downstream 942126 13452269 ~ 13452389 (-) True XLOC_034560
TCONS_00067296 other downstream 1674604 12719781 ~ 12719911 (-) True XLOC_034552
TCONS_00067285 other downstream 2790621 11603780 ~ 11603894 (-) True XLOC_034544
TCONS_00067317 other upstream 55167 14450524 ~ 14450620 (-) True XLOC_034571
TCONS_00067338 other upstream 1718943 16114300 ~ 16114428 (-) True XLOC_034583
TCONS_00067339 other upstream 1781490 16176847 ~ 16181592 (-) True XLOC_034585
TCONS_00067347 other upstream 1953382 16348739 ~ 16349432 (-) True XLOC_034591
TCONS_00067355 other upstream 2446642 16841999 ~ 16842116 (-) True XLOC_034594

Expression Profile

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