RNA id: TCONS_00067320


Basic Information

Item Value
RNA id TCONS_00067320
length 1350
lncRNA type lincRNA
GC content 0.40
exon number 4
gene id XLOC_034574
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 14995845 ~ 15084417 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAACACGTCACTAACATCATAGCCTACCAAAATATAGAGACACCAACCACAgttataggctagaaaatataaGTCTTCCTCGTGTATATTACTAATCGTGCAATCATAGTCAACATCCATGAATTCAGGTGAAGCTACTTTACAGTGGTAAATGTTgtgaagtattttaaaatgcacttcTTTGTTAACTTACACGTTTGACGTCAGCAATCAATAAGGAAGAAATGGAAGGACGGAATCCCGCCGACCAAAGATGAcactgTGTCTAGTAGCCAATCAGAGACGTTGGATGAGTCACCGCTGAAACACGAATACACGAGTGGAATGATAAGGATGCATGCGGATACCTACGAGTCTGCAGTCCAGTGATGTTTACACAACAAACATAAAAAGTCAGGAGAACGTGGCATAAGaAAGCAGTGAGCAGGAGTATCAGCTGTGGTGGATTGAGATAAACAGGTGTCCGGCTCACCCTGTGGCTCTGCTGTATTGATCAGAATGGCGGTCGGTGTGTTAGTGTGAGCTGAGGATTGTGTTGCGTTCACATGAACCGCAGCTCCACAGACCCCCTGACCTCCAGAGTGAGGTTTATTCCAGCACCGCCTGCGGCTCCTGTCATCTGCAGAGCCGGAGGGTAAAACTAGTGCAGAAAACTGCCTCGTCAAGCggacagacatttaaaatgaaaaagttgCTTCAGTCTGAAGGGTGATTTTGCCAAAGGCTTGACTTCAGAATGCATGCAGAGATATTCCACATCACGAACAGCTCCTCATCAAGCATTTATCATTTACACCAGGACGGTTTGAACTTTCTTAGAATGTTTGGGATTTCATCATTGAGGAACAAAATGTTGACCTCATGACATCATTTAATTCCTGTCTCTGTATTGAGTAGAAGGCACCTTTAAGGTGTGCACTTAAAATGATGAAGAGGGGCTTTTCTTTTAATACACATTTAATGGCTGAGCCGAGGGACTACATTTTTAGTAATTAAAGTACAAAAGGCGCtttcaaaatgcaaaataaaagtgtCAACTGAAGGGTGAGCAGTAAAATATAGAGGACAAGCCCCAGTTCCTGTGAGGTTTACAATAttccaaataaaaatgtatgtgtgtacataCGTAGGGATATATAATATCTGAACAAGATACAATATTGTTATGATTCTCACATCATGATACAATATTATTGCGAATAGtctttcaaattattattatctttgtGAGTAtttatatacagccatatatgGACACCTATATCAATTGTTGTCATGAACTGGACAGAATACAGAGTCAGAATTTGCTCAAACacaaagtttattaataaacaaagGCAGCTGTggac

Function

GO:

id name namespace
GO:0070646 protein modification by small protein removal biological_process
GO:0034587 piRNA metabolic process biological_process
GO:1990511 piRNA biosynthetic process biological_process
GO:0035770 ribonucleoprotein granule cellular_component
GO:0071546 pi-body cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0045495 pole plasm cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0036464 cytoplasmic ribonucleoprotein granule cellular_component
GO:0043186 P granule cellular_component
GO:0060293 germ plasm cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0019783 ubiquitin-like protein-specific protease activity molecular_function
GO:0034584 piRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000164031

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069161 lncRNA downstream 363010 14591067 ~ 14632839 (-) True XLOC_034573
TCONS_00067313 lncRNA downstream 613855 14353514 ~ 14381994 (-) False XLOC_034569
TCONS_00068669 lncRNA downstream 614331 14353922 ~ 14381518 (-) False XLOC_034569
TCONS_00069160 lncRNA downstream 614515 14353514 ~ 14381334 (-) False XLOC_034569
TCONS_00069159 lncRNA downstream 614527 14353514 ~ 14381322 (-) False XLOC_034569
TCONS_00067327 lncRNA upstream 130535 15214910 ~ 15252441 (-) False XLOC_034575
TCONS_00069165 lncRNA upstream 518678 15603053 ~ 15610261 (-) False XLOC_034578
TCONS_00069164 lncRNA upstream 518678 15603053 ~ 15610261 (-) True XLOC_034578
TCONS_00067333 lncRNA upstream 735203 15819578 ~ 15826387 (-) True XLOC_034579
TCONS_00069166 lncRNA upstream 812593 15896968 ~ 15900453 (-) True XLOC_034580
TCONS_00067318 mRNA downstream 459987 14512000 ~ 14535862 (-) False XLOC_034572
TCONS_00067319 mRNA downstream 459987 14512235 ~ 14535862 (-) True XLOC_034572
TCONS_00067315 mRNA downstream 549337 14393059 ~ 14446512 (-) False XLOC_034570
TCONS_00067311 mRNA downstream 1089440 13896769 ~ 13906409 (-) True XLOC_034566
TCONS_00067310 mRNA downstream 1111239 13868198 ~ 13884610 (-) True XLOC_034564
TCONS_00067322 mRNA upstream 2818 15087193 ~ 15185811 (-) False XLOC_034575
TCONS_00067323 mRNA upstream 2818 15087193 ~ 15252540 (-) False XLOC_034575
TCONS_00067324 mRNA upstream 23150 15107525 ~ 15118140 (-) False XLOC_034575
TCONS_00067325 mRNA upstream 110332 15194707 ~ 15252540 (-) False XLOC_034575
TCONS_00067326 mRNA upstream 130016 15214391 ~ 15257223 (-) False XLOC_034575
TCONS_00067317 other downstream 545229 14450524 ~ 14450620 (-) True XLOC_034571
TCONS_00067316 other downstream 600492 14394515 ~ 14395357 (-) True XLOC_034570
TCONS_00067314 other downstream 616218 14379544 ~ 14379631 (-) True XLOC_034569
TCONS_00067312 other downstream 900938 14094794 ~ 14094911 (-) True XLOC_034567
TCONS_00067306 other downstream 1543460 13452269 ~ 13452389 (-) True XLOC_034560
TCONS_00067338 other upstream 1029925 16114300 ~ 16114428 (-) True XLOC_034583
TCONS_00067339 other upstream 1092472 16176847 ~ 16181592 (-) True XLOC_034585
TCONS_00067347 other upstream 1264364 16348739 ~ 16349432 (-) True XLOC_034591
TCONS_00067355 other upstream 1757624 16841999 ~ 16842116 (-) True XLOC_034594
TCONS_00067360 other upstream 2177241 17261616 ~ 17264309 (-) True XLOC_034597

Expression Profile

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