RNA id: XR_005641425.1


Basic Information

Item Value
RNA id XR_005641425.1
length 438
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id LOC120572353
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 6828827 ~ 6831376 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCTGGGAGGATGCGATAATGAGGACAGTTAATTCAGAAACAGGGTGTGAGAGGCAGAGATTAGCCCGCCAGCAGGACGATGCTGTCCACAGATTTTCTGCTCTGAATGGCTGTCAGTGAGGGCCGAGGGGCTGGGACGGGCCGCCGAGCCGAGAGGAGAGGAGCGACAGTTTTAATTAAGGAAGCGTTTTGGTGATCCGGAGCCAGTGGCTGAAAGTTCGATGGAAGAGGAAGCCAAGCCAGCCATGCCCGCTGTCAAAACTGAGAAAGCAGCACGGGCTGGTTGAGGGGTGGGTGACATTTTGACAGTCTGGTCTCTTATCTCCTGAAAAAGGGGAATCATAAAAGTCGCCATGGATGCAAGGAAACATGCAGCACAGTGCTTATAATTTAATTAAAGTGAGGGCATAAGCAACTGTGCCTATGATCAATGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191149 lncRNA upstream 123723 6699298 ~ 6705104 (+) True G141703
XR_005641428.1 lncRNA upstream 172942 6648784 ~ 6655885 (+) True LOC120572354
XR_005641427.1 lncRNA upstream 172948 6648784 ~ 6655879 (+) False LOC120572354
TU191057 lncRNA upstream 250070 6571721 ~ 6578757 (+) True drap1
TU191099 lncRNA upstream 253656 6574848 ~ 6575171 (+) True G141661
XR_005641698.1 lncRNA downstream 647146 7478498 ~ 7497332 (+) True LOC120573369
TU191225 lncRNA downstream 686981 7518333 ~ 7518703 (+) True G141772
TU191233 lncRNA downstream 727354 7558706 ~ 7559187 (+) True G141780
TU191292 lncRNA downstream 884552 7715904 ~ 7716273 (+) True G141821
TU191301 lncRNA downstream 893361 7724713 ~ 7724951 (+) True G141830
XM_039822499.1 mRNA upstream 188582 6588951 ~ 6640245 (+) True LOC120573071
XM_039822068.1 mRNA upstream 250909 6571887 ~ 6577918 (+) False drap1
XM_039822064.1 mRNA upstream 262260 6549081 ~ 6566567 (+) False rela
XM_039821543.1 mRNA downstream 873495 7704847 ~ 7715407 (+) False alpk1
XM_039821541.1 mRNA downstream 874203 7705555 ~ 7715407 (+) True alpk1
XM_039823327.1 mRNA downstream 885252 7716604 ~ 7721656 (+) True LOC120573538
XM_039821551.1 mRNA downstream 890857 7722209 ~ 7724614 (+) True LOC120572296
XM_039821600.1 mRNA downstream 1138665 7970017 ~ 7985215 (+) True fxr2
XR_005641634.1 other upstream 188582 6588951 ~ 6640245 (+) False LOC120573071
unassigned_transcript_684 other upstream 591753 6237003 ~ 6237074 (+) True trnaw-cca_15
unassigned_transcript_682 other upstream 800114 6028640 ~ 6028713 (+) True trnat-agu_5
TU190258 other upstream 2341220 4483692 ~ 4487607 (+) True G141063
TU190255 other upstream 2383880 4440638 ~ 4444947 (+) True G141060
TU191293 other downstream 885262 7716614 ~ 7717329 (+) False LOC120573538
TU191297 other downstream 886668 7718020 ~ 7721637 (+) False LOC120573538
XR_005641421.1 other downstream 1158846 7990198 ~ 7997708 (+) False LOC120572330
XR_005641422.1 other downstream 1158846 7990198 ~ 7997707 (+) False LOC120572330
TU191556 other downstream 1581327 8412679 ~ 8413237 (+) False LOC120573548

Expression Profile