RNA id: XR_005641698.1


Basic Information

Item Value
RNA id XR_005641698.1
length 385
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC120573369
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 7478498 ~ 7497332 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaaaagcaacaacattAAAAGAGATCAAATCAACCCTCATCAGTTTACTCACTTGGATACACGCATACATTCTCCTCATAAAGATTAATGATACCCTAAATTGTCCCTTTGATGAACTGGTGAAATGGAGATGACATGCTGAGATTTTTCCTGGGCAGATATGAAAGAGTCTGCAGCTGTTATTACCAAAAACATCAAGTAAATGtgtttttttctgtgataGAGTTGCAGAGGAGGAAGCGGTGGAGCGCTTTGAAGAGGAAGGCCCACTCGCCTCTAACTGAACTGATCACAGACAAGGCAGAGACTACTGCTGCACGCAGAACAATGGACTCCTGGACTTCTGTTCAGTAACTGAGTTGAGCTTCCCCACTTTACTTTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191171 lncRNA upstream 647122 6828831 ~ 6831376 (+) True LOC120572353
XR_005641425.1 lncRNA upstream 647146 6828827 ~ 6831352 (+) False LOC120572353
TU191149 lncRNA upstream 773394 6699298 ~ 6705104 (+) True G141703
XR_005641428.1 lncRNA upstream 822613 6648784 ~ 6655885 (+) True LOC120572354
XR_005641427.1 lncRNA upstream 822619 6648784 ~ 6655879 (+) False LOC120572354
TU191225 lncRNA downstream 21001 7518333 ~ 7518703 (+) True G141772
TU191233 lncRNA downstream 61374 7558706 ~ 7559187 (+) True G141780
TU191292 lncRNA downstream 218572 7715904 ~ 7716273 (+) True G141821
TU191301 lncRNA downstream 227381 7724713 ~ 7724951 (+) True G141830
TU191306 lncRNA downstream 252951 7750283 ~ 7783035 (+) True G141835
XM_039822499.1 mRNA upstream 838253 6588951 ~ 6640245 (+) True LOC120573071
XM_039822068.1 mRNA upstream 900580 6571887 ~ 6577918 (+) False drap1
XM_039822064.1 mRNA upstream 911931 6549081 ~ 6566567 (+) False rela
XM_039821543.1 mRNA downstream 207515 7704847 ~ 7715407 (+) False alpk1
XM_039821541.1 mRNA downstream 208223 7705555 ~ 7715407 (+) True alpk1
XM_039823327.1 mRNA downstream 219272 7716604 ~ 7721656 (+) True LOC120573538
XM_039821551.1 mRNA downstream 224877 7722209 ~ 7724614 (+) True LOC120572296
XM_039821600.1 mRNA downstream 472685 7970017 ~ 7985215 (+) True fxr2
XR_005641634.1 other upstream 838253 6588951 ~ 6640245 (+) False LOC120573071
unassigned_transcript_684 other upstream 1241424 6237003 ~ 6237074 (+) True trnaw-cca_15
unassigned_transcript_682 other upstream 1449785 6028640 ~ 6028713 (+) True trnat-agu_5
TU190258 other upstream 2990891 4483692 ~ 4487607 (+) True G141063
TU190255 other upstream 3033551 4440638 ~ 4444947 (+) True G141060
TU191293 other downstream 219282 7716614 ~ 7717329 (+) False LOC120573538
TU191297 other downstream 220688 7718020 ~ 7721637 (+) False LOC120573538
XR_005641421.1 other downstream 492866 7990198 ~ 7997708 (+) False LOC120572330
XR_005641422.1 other downstream 492866 7990198 ~ 7997707 (+) False LOC120572330
TU191556 other downstream 915347 8412679 ~ 8413237 (+) False LOC120573548

Expression Profile