RNA id: XR_005641428.1


Basic Information

Item Value
RNA id XR_005641428.1
length 486
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id LOC120572354
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 6648784 ~ 6655885 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAAGCTTGGCTGTGTGAAATGAATGAAGCTAGCTAAACTAAATTAACTACATGTTAGCAGAGAGTAAAACAATAAGTGTTTGCGCTGTGCGGTATGTTCTGTTACTATTTGTTGTTCGGTTAAAGCGAGCGAAGGTGGAAGTTGGCTGTGACGCAGAAAACGGTCACAACATTACGGACTGCAGTGGGCGTGGAGTTGTTTTGACAAGACCGACATACACCTATACACCTGATGAACAGGAGCGGTCATAGCTTCCCATTCGGCGGTTAAGGGGAAATTTAAGGGAAACTTAAAGCTGACGTTAGCTTCCGGCAAAAAGACATTTCTCTAAGCCACCGACCAATACTAGGCCTATTCACATCTTTCCAAGCAAGATAAATCAACCGTTTGCTTGCAGTAAACACATATCTTGATCCAAGAGGGGAAACAAGGTACCCGCTGGCACTGAATAGTCTCTCAGATGGAACACTGGTTGCTGGGATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191083 lncRNA upstream 3569 6558298 ~ 6645215 (+) True G141659
TU191057 lncRNA upstream 70027 6571721 ~ 6578757 (+) True drap1
TU191099 lncRNA upstream 73613 6574848 ~ 6575171 (+) True G141661
TU191096 lncRNA upstream 78066 6568995 ~ 6570718 (+) False G141660
TU191098 lncRNA upstream 78066 6568995 ~ 6570718 (+) True G141660
TU191149 lncRNA downstream 43413 6699298 ~ 6705104 (+) True G141703
XR_005641425.1 lncRNA downstream 172942 6828827 ~ 6831352 (+) False LOC120572353
TU191171 lncRNA downstream 172946 6828831 ~ 6831376 (+) True LOC120572353
XR_005641698.1 lncRNA downstream 822613 7478498 ~ 7497332 (+) True LOC120573369
TU191225 lncRNA downstream 862448 7518333 ~ 7518703 (+) True G141772
XM_039822499.1 mRNA upstream 8539 6588951 ~ 6640245 (+) True LOC120573071
XM_039822068.1 mRNA upstream 70866 6571887 ~ 6577918 (+) False drap1
XM_039822063.1 mRNA upstream 82217 6549081 ~ 6566567 (+) True rela
XM_039822064.1 mRNA upstream 82217 6549081 ~ 6566567 (+) False rela
XM_039822065.1 mRNA upstream 82217 6549081 ~ 6566567 (+) False rela
XM_039821543.1 mRNA downstream 1048962 7704847 ~ 7715407 (+) False alpk1
XM_039821541.1 mRNA downstream 1049670 7705555 ~ 7715407 (+) True alpk1
XM_039823327.1 mRNA downstream 1060719 7716604 ~ 7721656 (+) True LOC120573538
XM_039821551.1 mRNA downstream 1066324 7722209 ~ 7724614 (+) True LOC120572296
XM_039821600.1 mRNA downstream 1314132 7970017 ~ 7985215 (+) True fxr2
XR_005641634.1 other upstream 8539 6588951 ~ 6640245 (+) False LOC120573071
unassigned_transcript_684 other upstream 411710 6237003 ~ 6237074 (+) True trnaw-cca_15
unassigned_transcript_682 other upstream 620071 6028640 ~ 6028713 (+) True trnat-agu_5
TU190258 other upstream 2161177 4483692 ~ 4487607 (+) True G141063
TU190255 other upstream 2203837 4440638 ~ 4444947 (+) True G141060
TU191293 other downstream 1060729 7716614 ~ 7717329 (+) False LOC120573538
TU191297 other downstream 1062135 7718020 ~ 7721637 (+) False LOC120573538
XR_005641421.1 other downstream 1334313 7990198 ~ 7997708 (+) False LOC120572330
XR_005641422.1 other downstream 1334313 7990198 ~ 7997707 (+) False LOC120572330
TU191556 other downstream 1756794 8412679 ~ 8413237 (+) False LOC120573548

Expression Profile