RNA id: TU199695


Basic Information

Item Value
RNA id TU199695
length 2164
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G147733
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 30484276 ~ 30487033 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAagcaattcaattacattttattcatagtatcaaatcataacaagatgattctcaggacactttacagatagagtaggtctagaccacactctataaactcacaaaccccaacaattacagtaattccctcaagagcaagcattatcagtggctattgcgacagtggcgaggaaaaactcccttttaggaagaaacctcggcagacccagactcttggtaggcggtgtctgacggggccggttgggggtgtgatgaacagtggcaaataatagtcacattaaagataatggaacaatgactttgaaggtcatcgtggaagttcatgtcatagcaggcacatcgtgtcatactgagtagtgcagtctcctataccggatccagactactctgtgcatgggaacatcacagcagggcgttgcgggatgtaatgtggcgctgcagagcatgggtggatgcggcagATGCAGCAGGAGGCAGCAGGACACAgctggatgcagcaggacgcagccggGAATTGCAACAATAATAATTGATAAAATTGCTATGAGCCCAAGACGTtcatgcatatttatttatattcataCTGTGCCTCTTCATCATTAGGACGTTGATATGGCCGTTCTTTACATTTTCTAAAGATCATTAaacctacaacaacaacaacaactccacCAAGAAAAAGTCCACCAAAAACTGATAGACCAACTATGAGTCCAGGACGTCCAGTGTGTCCAGGTGTTTGGCCTGCAGAGCAGAAAACAAGTGTGAGGTAAAGTTGCATCAACATCTTCATAAAACACAAACCTCCGATCTGTGATGTAACTTTGAGCTAAATAACCAGGAAACAGCTTTACATTCAAAGAGACACACTGAACTCTAAGGCTGAGAACAAGTAGCAACCTCTGAGcctaaaaaactgaaaaaaccAAAAGCAAGTCAATCCCCGTTGACCCCATGCGATGGCCGGAGCCACTGGCAGTAGCCCACTTTGAGCTTCATTTTATCTATTTAGAAAATTATGGGTAATGGAGACTAAATCCGTATTTTTCTAGGATCTGAATTCTTTCGACATACCCGAGTCTGTGACAGTCAGGTTGGTGGTTTGCCAGAAGTCAGTggctgtctcactgtctgtagCGTTCACTGCAACTCGACACAGATATGTTCCGGTGTCGTTGACGCTGACGTTCTTCAGAACAACAGAAAGGTCTCCATCCTTCATCTCCGGATCTCTCAGCTCCACTCGACCACGGAAAGAAGAATGCTGGTAATCTTCATAGGAATGGTTTTTTTCTCTGTAGAAGAAGACGTACTCTGACATCAGGTCAGACCTGCGCCATGTTAACAGTAGGATCTCAGCACCTCTGGGACCCCGACACTGAAGGATGGCGTTCTCTCCGGAATGTCCtgtaatatttaaaaagaaaatccagtGAAAAGCAGGAAGCAAAAGCCAGTAATAAAGATCAATTGTGAATAGTTTGTTTTCAAACTGCTCCAAGTGTGTTCACATGAAAGTGACCCAAGAACAGTACAGATGTGAAATACAAACTGCTTTctgcagtttgtttgtttttttatgttgaaagATGAAATTCCAATGTTGGTTTTTAAAAAGAGATTTCCTTACTTTACCTGGCAACAGTGTGGTTCACTTGTGTTGAGAAATATCAAGTTGTCAAGCTTGTGTGAAGGGTCGCCGTGGTAGTTCACATGGttgagcatgcgccccatgtaccaaggctcagtcgTTAATGTAGTAGCGCAGGTTCGATTCCATCCAGAAGTGCTTTGATGCATGTCAatttcattcactcattcattcattcattcattcattcattcattgatgTTTAAAACTGTtctatcaattaaaggcaaaAATACTCTTTTTTTAAGAACAATCTTTGTAACTGATGATAACCAAGAATTGGTTGGAACATGCCTACCTCTTCTGCTCAACAAAACAAACTTTGGTTTGAAAGAATTCATCcataatacaacaaaatattcaatacaacaacaaagttattacaaaataaaagaaacaaataattaatttgcaaCAGAGATTAAAGCAAGACATTCGCCGGAAATGAGGAAATATGCTTACGGGCTGTCAGCATGACAGCAGTTGTGTTGACTCCAAAGACGTCCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199699 lncRNA downstream 12998 30444419 ~ 30471278 (-) True G147735
TU199704 lncRNA downstream 29520 30454000 ~ 30454756 (-) True G147738
TU199684 lncRNA downstream 128168 30296425 ~ 30356108 (-) True G147724
TU199670 lncRNA downstream 229525 30225225 ~ 30254751 (-) True G147710
XR_005641559.1 lncRNA downstream 249260 30234172 ~ 30235016 (-) True LOC120572986
XR_005641545.1 lncRNA upstream 26619 30513652 ~ 30515051 (-) True LOC120572974
XR_005641574.1 lncRNA upstream 107879 30594912 ~ 30596759 (-) True LOC120572999
TU199736 lncRNA upstream 215562 30702595 ~ 30708393 (-) True G147762
TU199743 lncRNA upstream 252609 30739642 ~ 30746752 (-) True G147767
XR_005641629.1 lncRNA upstream 268110 30755143 ~ 30757393 (-) True LOC120573057
XM_039822399.1 mRNA downstream 9393 30470514 ~ 30474883 (-) True LOC120572884
XM_039822407.1 mRNA downstream 16651 30463330 ~ 30467625 (-) True LOC120572893
XM_039822408.1 mRNA downstream 33349 30449053 ~ 30450927 (-) True LOC120572894
XM_039822382.1 mRNA downstream 51033 30430801 ~ 30433243 (-) True LOC120572874
XM_039822484.1 mRNA downstream 61576 30417588 ~ 30422700 (-) True LOC120572951
XM_039822369.1 mRNA upstream 4763 30491796 ~ 30494808 (-) True LOC120572861
XM_039822405.1 mRNA upstream 10032 30497065 ~ 30510026 (-) False LOC120572891
XM_039822323.1 mRNA upstream 119495 30606528 ~ 30612446 (-) False LOC120572838
XM_039822320.1 mRNA upstream 119495 30606528 ~ 30612443 (-) False LOC120572838
XM_039822321.1 mRNA upstream 119495 30606528 ~ 30612443 (-) True LOC120572838
XR_005641504.1 other downstream 9701 30470495 ~ 30474575 (-) False LOC120572884
TU199660 other downstream 52485 30430992 ~ 30431791 (-) False LOC120572874
TU199640 other downstream 157456 30299732 ~ 30326820 (-) False G147699
XR_005641499.1 other downstream 167065 30297948 ~ 30317211 (-) False LOC120572840
XR_005641497.1 other downstream 184901 30297859 ~ 30299375 (-) False LOC120572840
XR_005641506.1 other upstream 16083 30503116 ~ 30510026 (-) False LOC120572891
XR_005641505.1 other upstream 16083 30503116 ~ 30510026 (-) True LOC120572891
TU199644 other upstream 188154 30675187 ~ 30676997 (-) False G147699
TU199667 other upstream 342937 30829970 ~ 30831320 (-) False LOC120572603
TU200398 other upstream 1120018 31607051 ~ 31608486 (-) False G148246

Expression Profile