RNA id: TU200054


Basic Information

Item Value
RNA id TU200054
length 318
lncRNA type read_through
GC content 0.41
exon number 2
gene id G148008
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 31954804 ~ 32347376 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gattttattttgcctttatGTTTGCTGGCCTGAATTGCCGTACTGGCCTGATTTGCCGAGATTTTATCTTCCTTTTATTTTGGGGGGGTTATATCACTACAAGCCTGATTACACTACAAGGCTGAATCATTTCAGATTCACTACAAGCCTTATTACACTATGAGCTGGATCAAACCACGGATTCACTACAAAGCATGTTTTCACTTCAAAACTGAATCAATTCACAGTTTCATTGGCGGCCATTTAGGTAAGTATGTTCCCTTGACCAGTCCTCGTCACGTTTTGGGGGATCAGCTTCTGACTTTCTAACCCCCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200046 lncRNA upstream 5967 31932175 ~ 31948837 (+) True G148005
XR_005641588.1 lncRNA upstream 82719 31859851 ~ 31872085 (+) False LOC120573014
TU200020 lncRNA upstream 93272 31837173 ~ 31861532 (+) True LOC120573014
TU200018 lncRNA upstream 110052 31769319 ~ 31844752 (+) False G147982
XR_005641623.1 lncRNA upstream 187043 31765475 ~ 31767761 (+) True LOC120573052
XR_005641540.1 lncRNA downstream 11485 32358861 ~ 32362237 (+) False LOC120572970
XR_005641539.1 lncRNA downstream 11493 32358869 ~ 32362237 (+) True LOC120572970
TU200099 lncRNA downstream 24337 32371713 ~ 32374042 (+) True G148039
TU200104 lncRNA downstream 31752 32379128 ~ 32407285 (+) True G148042
TU200107 lncRNA downstream 34470 32381846 ~ 32441157 (+) True G148043
XM_039822373.1 mRNA upstream 164774 31767954 ~ 31790030 (+) True LOC120572865
XM_039822372.1 mRNA upstream 164774 31767954 ~ 31790030 (+) False LOC120572865
XM_039822366.1 mRNA upstream 239122 31703062 ~ 31715682 (+) False LOC120572858
XM_039822386.1 mRNA downstream 49491 32396867 ~ 32401325 (+) True LOC120572878
XM_039822437.1 mRNA downstream 80488 32427864 ~ 32430614 (+) True LOC120572918
XM_039822435.1 mRNA downstream 108097 32455473 ~ 32457688 (+) True LOC120572915
XM_039822449.1 mRNA downstream 143103 32490479 ~ 32493796 (+) True LOC120572925
XM_039822423.1 mRNA downstream 201547 32548923 ~ 32551865 (+) True LOC120572905
TU200015 other upstream 117931 31702869 ~ 31836873 (+) True G147982
XR_005641511.1 other upstream 466817 31479201 ~ 31487987 (+) False LOC120572933
XR_005641512.1 other upstream 466817 31480688 ~ 31487987 (+) False LOC120572933
XR_005641513.1 other upstream 466817 31480688 ~ 31487987 (+) False LOC120572933
XR_005641514.1 other upstream 474324 31479193 ~ 31480480 (+) False LOC120572933
TU200151 other downstream 275518 32622894 ~ 32698317 (+) False G148079
TU199900 other downstream 356372 32703748 ~ 32720876 (+) True LOC120572879
TU199912 other downstream 601038 32948414 ~ 32951917 (+) False LOC120572610
TU200253 other downstream 891723 33239099 ~ 33285193 (+) False G148151
TU200990 other downstream 1380995 33728371 ~ 33864241 (+) False LOC120573051

Expression Profile