RNA id: XM_039822373.1


Basic Information

Item Value
RNA id XM_039822373.1
length 1093
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC120572865
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 31767954 ~ 31790030 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgtaaaacaaaAGACGTCCTCCAACCTCCCAGCTAGTTTCTATAAAGTGGGCTCCTTCATCAGGAATGAGCCcgcaggtcacatgaccatccaccatgtttccaggtctgatgaaggCCTCTACGTGTCTCATCAGAACTGTTGGAGAGTctccacccagctgggtctctgtcacagagAAACCCAAGACTACAAGTCCTCCTACAACCTCTGTCAGCTCTGGCTCCACCACTTCTTCCCTTCCCCAagctcccctcctcctcccccggctcctctcctccctcccccagctcctcctccctccccttgTGTTGTGGTCTGCTGTTTCAGTCGGTGTCCTggttctcctggttctcctggttctcctggttctcctggatctcctggttctcctggtTCTAAGATGCATCCGTATGAAACCTAGAGCTCAAGTAGAAGCTGGAGATAATGACGTCACATACAGTGATGTCACAATATCACGTAACCTgcaacagccaatcagacgGAGCAGAGAGAGTGATCCTGCTGCAATCTACTCTGGAGTGAGAAGAGAAGACGTCTGTAACGGACAAATAGtgatcaaagacaagaaatcaAACAGGAAGAAAGAGAGTGATCCTGCTGCAATCTACTCCAGAGTGAGAACAACAGATGTCAGTTACGGATAAATAGCGATCAAAGAGAAGAAGACAAAAGGAAGAGAGAGTCTCCAGCAGATCCAGAGGACCTCTACTCCTCAGTGAGGAAGACCGGAACACCATCACACCAGACCAACCAGTGGAGTCCAGCCAGCCAATCACTGGTCCCCAGAGACCCTCACACCTACATCTGTACCTGTATAGCAGTCTGGTCATCCAACCAACTGGCtttagaagtcccaaggtcGAGGTACAAACTGTGGGGGTCACTCTTTGCAGTTGCTGCCTCGAGACTTTGGAACTTAGTTACCACCTGACATTCACACCATTACCGACGTCGCTCTTTTGAAATCCAAAATTAAAACTTCTTTATTTAGAATGTTTTTTAATGCACAGTAGCGTTTCAGCATTTTCCCTTTCTTTCACCTGTTACTATGCAttactatatataata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641623.1 lncRNA upstream 193 31765475 ~ 31767761 (+) True LOC120573052
TU199990 lncRNA upstream 30516 31735137 ~ 31737438 (+) True G147963
TU199989 lncRNA upstream 32241 31580132 ~ 31735713 (+) False G147963
XR_005641590.1 lncRNA upstream 79565 31687061 ~ 31688389 (+) True LOC120573016
TU199998 lncRNA upstream 163626 31600558 ~ 31604328 (+) True G147968
TU200020 lncRNA downstream 47143 31837173 ~ 31861532 (+) True LOC120573014
XR_005641588.1 lncRNA downstream 69821 31859851 ~ 31872085 (+) False LOC120573014
TU200046 lncRNA downstream 142145 31932175 ~ 31948837 (+) True G148005
TU199888 lncRNA downstream 159289 31949319 ~ 32344268 (+) False LOC120572744
TU200053 lncRNA downstream 163993 31954023 ~ 32347029 (+) False G148007
XM_039822362.1 mRNA upstream 50601 31703062 ~ 31717353 (+) False LOC120572858
XM_039822364.1 mRNA upstream 52272 31703062 ~ 31715682 (+) True LOC120572858
XM_039822363.1 mRNA upstream 52272 31703062 ~ 31715682 (+) False LOC120572858
XM_039822366.1 mRNA upstream 52272 31703062 ~ 31715682 (+) False LOC120572858
XM_039822365.1 mRNA upstream 52272 31703062 ~ 31715682 (+) False LOC120572858
XM_039822430.1 mRNA downstream 195866 31985896 ~ 31989525 (+) True LOC120572911
XM_039822298.1 mRNA downstream 208231 31998261 ~ 32046440 (+) False LOC120572827
XM_039822299.1 mRNA downstream 208303 31998333 ~ 32046440 (+) True LOC120572827
XM_039822181.1 mRNA downstream 260753 32050783 ~ 32055436 (+) False LOC120572761
XM_039822183.1 mRNA downstream 260753 32050783 ~ 32055305 (+) False LOC120572761
XR_005641511.1 other upstream 279967 31479201 ~ 31487987 (+) False LOC120572933
XR_005641512.1 other upstream 279967 31480688 ~ 31487987 (+) False LOC120572933
XR_005641513.1 other upstream 279967 31480688 ~ 31487987 (+) False LOC120572933
XR_005641514.1 other upstream 287474 31479193 ~ 31480480 (+) False LOC120572933
TU199826 other upstream 540826 31226709 ~ 31227128 (+) True G147831
TU200151 other downstream 832864 32622894 ~ 32698317 (+) False G148079
TU199900 other downstream 913718 32703748 ~ 32720876 (+) True LOC120572879
TU199912 other downstream 1158384 32948414 ~ 32951917 (+) False LOC120572610
TU200253 other downstream 1449069 33239099 ~ 33285193 (+) False G148151
TU200990 other downstream 1938341 33728371 ~ 33864241 (+) False LOC120573051

Expression Profile