RNA id: TU200620



Basic Information


Item Value
RNA id TU200620
length 245
lncRNA type sense_over
GC content 0.46
exon number 3
gene id LOC120572607
representative False

Chromosome Information


Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 32132336 ~ 32375549 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CAAGATGAAGCTGGAGATGGTGATGTCACATACAGTGATGTCACAATATCACCtaacctgcagcagccaatcagacggAGCAGAGAGAGTGATCCTGCTGCAATCTACTCCGGAGTGAGAACAGAAGACGTCTGTAACGGACAAATAGTGATCAAAGACAAGAAGACAAAAAGGAAGAGAGagaGTGATCCAGCTGCAATCTACTCTGGGGtgatcaaagacaagaaaacaaACAGGAAGAGAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU200609 lncRNA downstream 3417 32057882 ~ 32138398 (-) True G148386
TU200605 lncRNA downstream 38357 32041106 ~ 32103458 (-) True G148383
TU200596 lncRNA downstream 141965 31998888 ~ 31999850 (-) True G148374
XR_005641549.1 lncRNA downstream 163609 31977555 ~ 31978206 (-) True LOC120572976
TU200582 lncRNA downstream 196427 31932994 ~ 31945388 (-) False G148362
TU200631 lncRNA upstream 83830 32245361 ~ 32246827 (-) True G148398
TU200641 lncRNA upstream 161922 32323453 ~ 32323850 (-) True G148407
TU200642 lncRNA upstream 161922 32323453 ~ 32323850 (-) False G148407
TU200526 lncRNA upstream 173451 32334982 ~ 32339504 (-) True G148315
TU200645 lncRNA upstream 194927 32356458 ~ 32357149 (-) True G148409
XM_039822251.1 mRNA downstream 468191 31277977 ~ 31673624 (-) True LOC120572802
XM_039822162.1 mRNA downstream 518002 31435815 ~ 31623813 (-) False LOC120572747
XM_039822159.1 mRNA downstream 518002 31435815 ~ 31623813 (-) True LOC120572747
XM_039822160.1 mRNA downstream 518002 31435815 ~ 31623813 (-) False LOC120572747
XM_039822161.1 mRNA downstream 518003 31435815 ~ 31623812 (-) False LOC120572747
XM_039822253.1 mRNA upstream 220222 32381753 ~ 32419579 (-) True LOC120572803
XM_039822254.1 mRNA upstream 247812 32409343 ~ 32419579 (-) False LOC120572803
XM_039822256.1 mRNA upstream 279117 32440648 ~ 32448330 (-) True LOC120572804
XM_039822255.1 mRNA upstream 279624 32441155 ~ 32448330 (-) False LOC120572804
XM_039822257.1 mRNA upstream 282397 32443928 ~ 32448330 (-) False LOC120572804
TU200397 other downstream 404133 31717372 ~ 31737682 (-) False G148246
TU200398 other downstream 533329 31607051 ~ 31608486 (-) False G148246
TU199667 other downstream 1310495 30829970 ~ 30831320 (-) False LOC120572603
TU199644 other downstream 1464818 30675187 ~ 30676997 (-) False G147699
XR_005641505.1 other downstream 1631789 30503116 ~ 30510026 (-) True LOC120572891
TU200566 other upstream 1525 32163056 ~ 32167375 (-) False LOC120572607
TU200650 other upstream 211547 32373078 ~ 32375549 (-) False LOC120572607
TU200707 other upstream 536790 32698321 ~ 32700405 (-) True G148453
TU200744 other upstream 569549 32731080 ~ 32755361 (-) True G148472
TU200833 other upstream 783814 32945345 ~ 32945806 (-) True G148536

Expression Profile